当前解析结果
SmilChr01G005368| 统一新 Gene ID | SmilChr01G005368 |
|---|---|
| 名称 | SmilChr01G005368 |
| 描述 | zinc finger CCCH domain-containing protein 29-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 70892558 - 70894994 / - |
| NCBI Gene ID | LOC131005697 |
|---|---|
| GeneID | 131005697 |
| locus_tag | - |
| NCBI Name | LOC131005697 |
| 原始查询 | SmilChr01G005368 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger CCCH domain-containing protein 29-like |
| 产物 | zinc finger CCCH domain-containing protein 29-like |
| Arabidopsis | AT2G40140 (CZF1)zinc finger (CCCH-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:818605] identity=49; qcov=1.18; evalue=7.23e-171; confidence=high |
| Rice | Os05g0128200 (OsC3H33)- identity=41.4; qcov=1.1; evalue=1.45e-120; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF25512 (zf-CCCH_AtC3H23) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057788716.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057788716.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057788716.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057788716.1 |
| 5 | P-body | P-body | 0.20000 | XP_057788716.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:70892809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B65,B98,C47,C67 |
Chr1:70892887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,C3 |
Chr1:70892982 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C2 |
Chr1:70892982 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C2 |
Chr1:70893040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr1:70893100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B76,B93 |
Chr1:70893256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B101 |
Chr1:70893321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr1:70893484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C3 |
Chr1:70893689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B82,C76 |
Chr1:70893691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr1:70893754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B5,C18,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788716.1PF12796
Ank_2 68-137 aa
PF13637
Ank_4 75-127 aa
PF00023
Ank 103-137 aa
PF25512
zf-CCCH_AtC3H23 209-242 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788716.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 68 | 137 | 2.8e-09 | 38.1 | Ankyrin repeats (3 copies) |
XP_057788716.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 75 | 127 | 1.5e-06 | 29.0 | Ankyrin repeats (many copies) |
XP_057788716.1 |
Pfam | PF00023 |
Ank | Repeat | 103 | 137 | 1.7e-10 | 41.3 | Ankyrin repeat |
XP_057788716.1 |
Pfam | PF25512 |
zf-CCCH_AtC3H23 | Domain | 209 | 242 | 1.3e-20 | 73.5 | AtC3H23-like, CCCH zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。