Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005372`

染色体: Chr01 坐标: 70947367-70952470 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005372`
名称	SmilChr01G005372
描述	uncharacterized SmilChr01G005372
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70947367 - 70952470 / `+`

ID 对照

NCBI Gene ID	`LOC131005701`
GeneID	`131005701`
locus_tag	`-`
NCBI Name	`LOC131005701`
原始查询	`SmilChr01G005372`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818603]; symbol=AT2G40120; hit=AT2G40120; species=arabidopsis; confidence=medium
产物	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818603]; symbol=AT2G40120; hit=AT2G40120; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G40120` (AT2G40120) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818603] identity=68.2; qcov=0.955; evalue=2.64e-44; confidence=medium
Rice	`Os05g0466900` - identity=54.6; qcov=0.964; evalue=1.17e-33; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0018105 (peptidyl-serine phosphorylation); GO:0018107 (peptidyl-threonine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131005701

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788719.1`
2	Cytoplasm	细胞质	1.00000	`XP_057788719.1`
3	Cytosol	细胞质基质	0.80000	`XP_057788721.1`
4	Nucleoplasm	核质	0.20000	`XP_057788719.1`
5	Chromosome	染色体	0.00000	`XP_057788720.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70947693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C20,C49,C6
`Chr1:70947747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70949327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70949405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:70949774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A23,B65,B93
`Chr1:70949777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B123,B6,B64
`Chr1:70949936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:70950165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B103,B139,B94,C71
`Chr1:70950297`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr1:70950381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C82
`Chr1:70950406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:70951519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788719.1

668 aa

334

668

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 357-665 aa PF07714 PK_Tyr_Ser-Thr 360-560 aa

XP_057788720.1

577 aa

288

577

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 357-561 aa PF07714 PK_Tyr_Ser-Thr 360-558 aa

XP_057788721.1

561 aa

280

561

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 250-558 aa PF07714 PK_Tyr_Ser-Thr 253-453 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788719.1`	Pfam	`PF00069`	Pkinase	Domain	357	665	1.9e-50	172.5	Protein kinase domain
`XP_057788719.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	360	560	3e-17	63.5	Protein tyrosine and serine/threonine kinase
`XP_057788720.1`	Pfam	`PF00069`	Pkinase	Domain	357	561	4.5e-41	141.7	Protein kinase domain
`XP_057788720.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	360	558	3.7e-17	63.2	Protein tyrosine and serine/threonine kinase
`XP_057788721.1`	Pfam	`PF00069`	Pkinase	Domain	250	558	1.2e-50	173.1	Protein kinase domain
`XP_057788721.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	253	453	2.1e-17	64.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057932736.1
TCTCTTTCCCGTTGGCTTCTAATTTACAGCAGAAAGAGAGAAAGAAACGAACAACTCTACAAACACAAAGAGAGAAGATCTCTTTCCCGTTGTCTACATATATATTTAGTGTGTGTAGAGAGAGAGAGAGAGAAGGGACACGGACATGCAAAGCCCAAGTGCTGATCAATGTCCATCACCAACTCCTACTTTTGACCCACTCCATTCCCATGAACTCACCGCTCTTTCTTTATTATTATACCACCTCTCTTGAATTCAAT...

XM_057932737.1
CCCGTTGGCTTCTAATTTACAGCAGAAAGAGAGAAAGAAACGAACAACTCTACAAACACAAAGAGAGAAGATCTCTTTCCCGTTGTCTACATATATATTTAGTGTGTGTAGAGAGAGAGAGAGAGAAGGGACACGGACATGCAAAGCCCAAGTGCTGATCAATGTCCATCACCAACTCCTACTTTTGACCCACTCCATTCCCATGAACTCACCGCTCTTTCTTTATTATTATACCACCTCTCTTGAATTCAATCACTCCT...

CDS

4 records

下载 CDS FASTA

LOC131005701
ATGGCGGAGATAGAGCTCCACACCGTGCTGCAATTCTTCAGGAAAAATGGACTGTCGGAGTGCGAATCGGCACTCATGGAAGACATCATGGACAAAAAATCTCAAGTGGGCTCTTCCGCTTTCGAGACGTTATGCTTCCCGCCGCTGAGAATTCCGGCCACCCGGAGGCCGCCGCCGCACTTCGCTGATGGTGCCGTTGTGAGCCCTAATGGCTCTTCTGATGATGAGTTTGTCAGTTTGGGCTCTTCCACTACTGAGTT...

Protein

4 records

下载 Protein FASTA

XP_057788719.1
MAEIELHTVLQFFRKNGLSECESALMEDIMDKKSQVGSSAFETLCFPPLRIPATRRPPPHFADGAVVSPNGSSDDEFVSLGSSTTEFPSSDFTNPYGIHNTTRPASQASSDRLSQFGTARDYPDFDMQDDLFWYKEDDEDYVMPPHFDGRDFDGDPSEDKFVMSVQTEEPVEDETKYNVISEGRKRWALALEESLKCEHDNDCDEENFQLEKSYKKCEEHFNDYSCSAPLCACCNGIGTVYTGELKIEDVFELEARGEHH...

XP_057788720.1
MAEIELHTVLQFFRKNGLSECESALMEDIMDKKSQVGSSAFETLCFPPLRIPATRRPPPHFADGAVVSPNGSSDDEFVSLGSSTTEFPSSDFTNPYGIHNTTRPASQASSDRLSQFGTARDYPDFDMQDDLFWYKEDDEDYVMPPHFDGRDFDGDPSEDKFVMSVQTEEPVEDETKYNVISEGRKRWALALEESLKCEHDNDCDEENFQLEKSYKKCEEHFNDYSCSAPLCACCNGIGTVYTGELKIEDVFELEARGEHH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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