Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005375`

染色体: Chr01 坐标: 70973790-70980132 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005375`
名称	SmilChr01G005375
描述	NF-X1-type zinc finger protein NFXL2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70973790 - 70980132 / `-`

ID 对照

NCBI Gene ID	`LOC131005704`
GeneID	`131005704`
locus_tag	`-`
NCBI Name	`LOC131005704`
原始查询	`SmilChr01G005375`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NF-X1-type zinc finger protein NFXL2
产物	NF-X1-type zinc finger protein NFXL2
Arabidopsis	`AT5G05660` (NFXL2) NF-X1-type zinc finger protein NFXL2 [Source:NCBI gene (formerly Entrezgene);Acc:830450] identity=63.6; qcov=0.979; evalue=0; confidence=high
Rice	`Os01g0158900` - identity=57; qcov=0.982; evalue=0; confidence=high
GO	GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF01422 (zf-NF-X1)
InterPro	-
eggNOG	-
NR	GeneID:131005704

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788725.1`
2	Cytoplasm	细胞质	0.40000	`XP_057788725.1`
3	Cytosol	细胞质基质	0.20000	`XP_057788725.1`
4	Chromosome	染色体	0.00000	`XP_057788725.1`
5	Centromere	着丝粒	0.00000	`XP_057788725.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:70974147`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	B19
`Chr1:70974147`	`CCT`	`C`	2bp_deletion	CDS_variant	1	B19
`Chr1:70974266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:70974275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:70974419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr1:70974615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:70974717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B121
`Chr1:70975496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C47,C8
`Chr1:70975511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr1:70976564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:70976834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr1:70976865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788725.1

867 aa

434

867

zf-NF-X1

PF01422 zf-NF-X1 187-204 aa PF01422 zf-NF-X1 241-257 aa PF01422 zf-NF-X1 292-310 aa PF01422 zf-NF-X1 346-361 aa PF01422 zf-NF-X1 399-417 aa PF01422 zf-NF-X1 426-444 aa PF01422 zf-NF-X1 493-503 aa PF01422 zf-NF-X1 512-521 aa PF01422 zf-NF-X1 594-605 aa PF01422 zf-NF-X1 634-649 aa PF01422 zf-NF-X1 697-713 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	187	204	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	241	257	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	292	310	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	346	361	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	399	417	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	426	444	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	493	503	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	512	521	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	594	605	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	634	649	3.1e-06	27.8	NF-X1 type zinc finger
`XP_057788725.1`	Pfam	`PF01422`	zf-NF-X1	Family	697	713	3.1e-06	27.8	NF-X1 type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932742.1
TACCATCGCTACCTAACTAGCTAGTTAGTAGCTAAATAAGTATATACCTTGCTACAAGTGCCAAATTTCCTCGTATTTGTAGGTGAAGATTTATCAGCCAAAATCCCCAAAAAAATGCTCTCCTCCGCCACCCAACCGCCGCAGCTCTCCTCTGACTCTGACTCGGACTCCGATACATCCTCCCTCTCCCATTCCCATCAGCGCCACCCTGACCTCTCCTCCTCCATCTTCCAATCCTACCTCTCCCATTCCAATTCTCG...

CDS

1 records

下载 CDS FASTA

LOC131005704
ATGCTCTCCTCCGCCACCCAACCGCCGCAGCTCTCCTCTGACTCTGACTCGGACTCCGATACATCCTCCCTCTCCCATTCCCATCAGCGCCACCCTGACCTCTCCTCCTCCATCTTCCAATCCTACCTCTCCCATTCCAATTCTCGCAACACTGGCGATGATCTTCACCATCAAGATCTCATAAAAATCCAATCTTTTCTCACCTCCTCGCGCGCCGGCGGCCTCTCCTGCCTCATTTGCCTCGAACGCATCAAACCCAC...

Protein

1 records

下载 Protein FASTA

XP_057788725.1
MLSSATQPPQLSSDSDSDSDTSSLSHSHQRHPDLSSSIFQSYLSHSNSRNTGDDLHHQDLIKIQSFLTSSRAGGLSCLICLERIKPTDPTWSCSARCFAIFHLLCIQSWAHQSTTLAASRASARAAVAPDENSFVWPCPKCRVEYPKRQTPKNYYCFCGKVEDPPRDPWVLPHSCGEVCGRSLKYDCGHFCLLLCHPGPCPACPKLVKNKCFCGKLEDVRRCGLKYFSCKGVCGRLLECEAHRCGEICHDGLCQPCRAKG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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