Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005378`

染色体: Chr01 坐标: 70999770-71005313 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005378`
名称	SmilChr01G005378
描述	uncharacterized SmilChr01G005378
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	70999770 - 71005313 / `-`

ID 对照

NCBI Gene ID	`LOC131005708`
GeneID	`131005708`
locus_tag	`-`
NCBI Name	`LOC131005708`
原始查询	`SmilChr01G005378`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831203]; symbol=AT5G13590; hit=AT5G13590; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831203]; symbol=AT5G13590; hit=AT5G13590; species=arabidopsis; confidence=low
Arabidopsis	`AT5G13590` (AT5G13590) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831203] identity=27; qcov=0.409; evalue=2.92e-23; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131005708

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788728.1`
2	Chromosome	染色体	0.00000	`XP_057788728.1`
3	Centromere	着丝粒	0.00000	`XP_057788728.1`
4	Chromatin	染色质	0.00000	`XP_057788728.1`
5	Telomere	端粒	0.00000	`XP_057788728.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71000638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C85
`Chr1:71000721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:71001109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:71001726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr1:71002153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr1:71002166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:71002177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr1:71002208`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B104,B35
`Chr1:71002208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B35
`Chr1:71002209`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B17
`Chr1:71002209`	`GC`	`G`	1bp_deletion	CDS_variant	1	B17
`Chr1:71002440`	`GC`	`G`	1bp_deletion	frameshift_variant	2	C1,C27

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932746.1
AAATTGCAGAAAAGCACAAACCCTAATTCATCAAATCTCCATTTATTTATTTTTATGGAAACCACTTGGAAACCACCTTCATCAGTCTTCTTCCTCCTTTTCTCCTCTCAGTTTTCTCCTTTTCACACTACAAACCTTTCTTCATATTTCTCTCCTTCTCTCTTCTATCTCTGATTTTCTCTGGTTCTCTCTCTTCATATTCTAGGGCTATTGTATTTGGACTCATGTCAATTCCAGGAAATGCAGAGTCTGGGACATTT...

XM_057932747.1
TGCAGAAAAGCACAAACCCTAATTCATCAAATCTCCATTTATTTATTTTTATGGAAACCACTTGGAAACCACCTTCATCAGTCTTCTTCCTCCTTTTCTCCTCTCAGTTTTCTCCTTTTCACACTACAAACCTTTCTTCATATTTCTCTCCTTCTCTCTTCTATCTCTGATTTTCTCTGGTTCTCTCTCTTCATATTCTAGGTAATTCTTTTTACCAGATATGTGTGGATTTTGTTTCGATGTGTCCGCCACCGATCTGA...

CDS

3 records

下载 CDS FASTA

LOC131005708
ATGTCAATTCCAGGAAATGCAGAGTCTGGGACATTTTCCGGGCAGCAGCAGGTACACCAGCAGCAGTCTCTTAATTTTTCCAGTGCTATTCCTATAAAGAAGAGACGATTTCCTGTATTCCAACCATGTTCTCCTCCCCGAGAAGAAAAGCCTTCGGTTTTGGAGGACCACGATTCAAAGAAAAAAGAAGAGCCTAACGGCCAAGATGGAGGGATGTCGTCAAGTGAAGCAAAAGATTCTGCTTCTCTGGTTAACTCGGG...

Protein

3 records

下载 Protein FASTA

XP_057788728.1
MSIPGNAESGTFSGQQQVHQQQSLNFSSAIPIKKRRFPVFQPCSPPREEKPSVLEDHDSKKKEEPNGQDGGMSSSEAKDSASLVNSGVTGSCASAVENEVAPLSLPNVDILASKPVEANPRISLGSLDDSGNKMVIVQSEKSSEPEVPDSSMIAQTAHVKQEIVGGQTEGTCGLQLSSGKMNVELSLGPKGSVIPASEHQQKEANFRKSDKLESLLSLGLHEEKLVLRDKKDIATDSSNPVSANRSNWDLNTTMDVWEGS...

XP_057788729.1
MSIPGNAESGTFSGQQQVHQQQSLNFSSAIPIKKRRFPVFQPCSPPREEKPSVLEDHDSKKKEEPNGQDGGMSSSEAKDSASLVNSGVTGSCASAVENEVAPLSLPNVDILASKPVEANPRISLGSLDDSGNKMVIVQSEKSSEPEVPDSSMIAQTAHVKQEIVGGQTEGTCGLQLSSGKMNVELSLGPKGSVIPASEHQQKEANFRKSDKLESLLSLGLHEEKLVLRDKKDIATDSSNPVSANRSNWDLNTTMDVWEGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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