当前解析结果
SmilChr01G005380| 统一新 Gene ID | SmilChr01G005380 |
|---|---|
| 名称 | SmilChr01G005380 |
| 描述 | F-box/FBD/LRR-repeat protein At3g26920-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71030429 - 71031319 / + |
| NCBI Gene ID | LOC131012541 |
|---|---|
| GeneID | 131012541 |
| locus_tag | - |
| NCBI Name | LOC131012541 |
| 原始查询 | SmilChr01G005380 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/FBD/LRR-repeat protein At3g26920-like |
| 产物 | F-box/FBD/LRR-repeat protein At3g26920-like |
| Arabidopsis | AT1G80960 (AT1G80960)F-box and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844436] identity=29; qcov=0.828; evalue=8.19e-12; confidence=low |
| Rice | Os07g0285200 (OsFbox363)- identity=29; qcov=0.804; evalue=1.4e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012541 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796509.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057796509.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796509.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796509.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796509.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71030432 |
G |
GCA |
2bp_insertion | frameshift_variant | 7 | A4,B10,B114,B139,B56,C15,D4 |
Chr1:71030551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,B22,B49,B74 |
Chr1:71030577 |
CTG |
C |
2bp_deletion | frameshift_variant | 30 | A16,A22,A7,B100,B103,B108,B112,B12,B128,B139,B25,B26,B41,B61,B7,B70,B76,B87,C11,C17,C23,C25,C66,C69,C71,C77,C81,C85,D11,D6 |
Chr1:71030628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr1:71030634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B70,C69 |
Chr1:71030755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr1:71030766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C56,C65 |
Chr1:71030794 |
G |
A |
EMS_canonical_SNV | stop_gained | 13 | A21,B111,B133,B17,B21,B40,B82,B86,C1,C48,C58,C62,C82 |
Chr1:71030847 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | A1,A7,A9,B127,B137,B79,C78 |
Chr1:71030928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B29,B62,B89,D9 |
Chr1:71030951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C70 |
Chr1:71030969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796509.1PF00646
F-box 15-52 aa
PF23622
LRR_At1g61320_AtMIF1 104-242 aa
PF24758
LRR_At5g56370 148-232 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796509.1 |
Pfam | PF00646 |
F-box | Domain | 15 | 52 | 1e-06 | 29.1 | F-box domain |
XP_057796509.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 104 | 242 | 1.1e-07 | 32.4 | At1g61320/AtMIF1, LRR domain |
XP_057796509.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 148 | 232 | 1.7e-08 | 35.1 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。