Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005395`

染色体: Chr01 坐标: 71214442-71218585 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005395`
名称	SmilChr01G005395
描述	uncharacterized SmilChr01G005395
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71214442 - 71218585 / `-`

ID 对照

NCBI Gene ID	`LOC131005723`
GeneID	`131005723`
locus_tag	`-`
NCBI Name	`LOC131005723`
原始查询	`SmilChr01G005395`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-hydroxyacyl-CoA dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820760]; symbol=AT3G15290; hit=AT3G15290; species=arabidopsis; confidence=high
产物	3-hydroxyacyl-CoA dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820760]; symbol=AT3G15290; hit=AT3G15290; species=arabidopsis; confidence=high
Arabidopsis	`AT3G15290` (AT3G15290) 3-hydroxyacyl-CoA dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820760] identity=75.8; qcov=0.939; evalue=2.08e-157; confidence=high
Rice	`Os01g0796400` (P0699H05.27-1) - identity=69; qcov=0.939; evalue=2.85e-146; confidence=high
GO	GO:0006631 (fatty acid metabolic process); GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor); GO:0070403 (NAD+ binding)
KEGG	smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00725 (3HCDH); PF02737 (3HCDH_N)
InterPro	-
eggNOG	-
NR	GeneID:131005723

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057788758.1`
2	Cytosol	细胞质基质	0.80000	`XP_057788758.1`
3	Nucleus	细胞核	0.20000	`XP_057788758.1`
4	Chloroplast	叶绿体	0.20000	`XP_057788758.1`
5	Chromosome	染色体	0.00000	`XP_057788758.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71214778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:71214785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:71214790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:71214868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B120,B78,C55,C76
`Chr1:71214880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B75
`Chr1:71214886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B120,C55,C76
`Chr1:71216884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr1:71216994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C7
`Chr1:71217000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr1:71217487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,D7
`Chr1:71217550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:71217552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B66,C22,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788758.1

295 aa

148

295

3HCDH_N

3HCDH

PF02737 3HCDH_N 16-193 aa PF00725 3HCDH 196-292 aa

XP_057788759.1

295 aa

148

295

3HCDH_N

3HCDH

PF02737 3HCDH_N 16-193 aa PF00725 3HCDH 196-292 aa

XP_057788760.1

295 aa

148

295

3HCDH_N

3HCDH

PF02737 3HCDH_N 16-193 aa PF00725 3HCDH 196-292 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788758.1`	Pfam	`PF02737`	3HCDH_N	Domain	16	193	3.1e-62	210.4	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
`XP_057788758.1`	Pfam	`PF00725`	3HCDH	Domain	196	292	1.1e-36	126.0	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
`XP_057788759.1`	Pfam	`PF02737`	3HCDH_N	Domain	16	193	3.1e-62	210.4	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
`XP_057788759.1`	Pfam	`PF00725`	3HCDH	Domain	196	292	1.1e-36	126.0	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
`XP_057788760.1`	Pfam	`PF02737`	3HCDH_N	Domain	16	193	3.1e-62	210.4	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
`XP_057788760.1`	Pfam	`PF00725`	3HCDH	Domain	196	292	1.1e-36	126.0	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057932775.1
TACATATTCTACTGATTGGTGCGCCATTCTATGATTGTTTGAGCTGCCCAAACAAATTCTACTCGGAGTTGAGATTGAGGAATAAGTCTGCAAGGATCTATGTCGAGTCGCCACGGTCTCCCGCTCGAAGATGTTAAAATGTGTGTTGGTGTTGTGGGAAGTGGCCAAATGGGTTCGGGAATCGCACAGCTCGCAGCAGTGAATGGCTGTGAGGTGTGGCTTCATGACTCCGACTCTGTGGCTCTCTCAAAAGCACGTGA...

XM_057932777.1
GGTGCGCCATTCTATGATTGTTTGAGCTGCCCAAACAAATTCTACTCGGAGTTGAGGTAACTGTGTTTCTTTCATCTCTTCTTCTATTTTCTCTTTTTCTCGTTGGAATGTGTTGTTGCTGTAACTGGAGCAGTGGAGTGTGTGCGTGGAGGATGTGGTTGCCGGTGGTGGCAGGCGGCGGCTGAAGGAAGGAGGAGAATAGATCATTTTATATATTTGCATATCGGGCGACGAAGTAATTGTACGGAGAAGTCTCGCAG...

CDS

3 records

下载 CDS FASTA

LOC131005723
ATGTCGAGTCGCCACGGTCTCCCGCTCGAAGATGTTAAAATGTGTGTTGGTGTTGTGGGAAGTGGCCAAATGGGTTCGGGAATCGCACAGCTCGCAGCAGTGAATGGCTGTGAGGTGTGGCTTCATGACTCCGACTCTGTGGCTCTCTCAAAAGCACGTGAATCTATCTCCTCGAGAATCGAAAACATGGTCCTCAAAGGCCATCTCACTAAGGAAAAAGGCGCTGAAGCTATAAGGAACTTGAGGTTTACTTCAAATAT...

Protein

3 records

下载 Protein FASTA

XP_057788758.1
MSSRHGLPLEDVKMCVGVVGSGQMGSGIAQLAAVNGCEVWLHDSDSVALSKARESISSRIENMVLKGHLTKEKGAEAIRNLRFTSNIEDFHSADMVIEAIVESEDVKKKLFIQLDNIVKSSCILASNTSSISITRLASVTSRPSQVIGMHFMNPPPVMKLVEIIRGHSTSDDTFNATKLLAERFGKKIVCSQDFSGFIVNRILMPMINEAFYALYTGVATKEDIDAGMKLGTNHPMGPLELADHIGLDVCLSIMKVLHAG...

XP_057788759.1
MSSRHGLPLEDVKMCVGVVGSGQMGSGIAQLAAVNGCEVWLHDSDSVALSKARESISSRIENMVLKGHLTKEKGAEAIRNLRFTSNIEDFHSADMVIEAIVESEDVKKKLFIQLDNIVKSSCILASNTSSISITRLASVTSRPSQVIGMHFMNPPPVMKLVEIIRGHSTSDDTFNATKLLAERFGKKIVCSQDFSGFIVNRILMPMINEAFYALYTGVATKEDIDAGMKLGTNHPMGPLELADHIGLDVCLSIMKVLHAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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