Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005398`

染色体: Chr01 坐标: 71250694-71253099 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005398`
名称	SmilChr01G005398
描述	probable protein phosphatase 2C 25
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71250694 - 71253099 / `+`

ID 对照

NCBI Gene ID	`LOC131005726`
GeneID	`131005726`
locus_tag	`-`
NCBI Name	`LOC131005726`
原始查询	`SmilChr01G005398`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein phosphatase 2C 25
产物	probable protein phosphatase 2C 25
Arabidopsis	`AT2G30020` (AT2G30020) Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:817553] identity=53.1; qcov=1.09; evalue=3.26e-130; confidence=high
Rice	`Os03g0292100` (OsPP2C32) - identity=56.6; qcov=0.828; evalue=4.45e-108; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding)
KEGG	-
Pfam	PF00481 (PP2C)
InterPro	-
eggNOG	-
NR	GeneID:131005726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788763.1`
2	Cytosol	细胞质基质	0.40000	`XP_057788762.1`
3	Chloroplast	叶绿体	0.20000	`XP_057788762.1`
4	Chromosome	染色体	0.00000	`XP_057788762.1`
5	Centromere	着丝粒	0.00000	`XP_057788762.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71250844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C49,D10
`Chr1:71250846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C49,D10
`Chr1:71250891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B71,B80,C49,D10
`Chr1:71250895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B66,C79
`Chr1:71250991`	`AG`	`A`	1bp_deletion	frameshift_variant	102	A1,A11,A14,A16,A19,A2,A24,A25,A6,A8,B10,B102,B106,B108,B11,B111,B114,B115,B117,B119,B12,B120,B121,B124,B125,B126,B131,B133,B139,B16,B17,B2,B22,B24,B29,B31,B32,B34,B36,B37,B38,B39,B41,B42,B43,B46,B48,B49,B50,B53,B54,B56,B58,B59,B6,B60,B62,B63,B65,B66,B69,B7,B74,B76,B79,B8,B80,B82,B88,B9,B90,B92,B98,B99,C10,C18,C21,C24,C25,C38,C44,C48,C51,C57,C6,C62,C63,C64,C66,C71,C72,C73,C75,C78,C80,C84,C85,D1,D4,D6,D7,D8
`Chr1:71251024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B131,C23,C48
`Chr1:71251108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B76,D2
`Chr1:71251651`	`A`	`AT`	1bp_insertion	frameshift_variant	3	C21,C22,D1
`Chr1:71251651`	`A`	`AT`	1bp_insertion	CDS_variant	3	C21,C22,D1
`Chr1:71251750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr1:71251776`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B29
`Chr1:71251776`	`AG`	`A`	1bp_deletion	CDS_variant	1	B29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788762.1

378 aa

189

378

PP2C

PF00481 PP2C 136-315 aa

XP_057788763.1

367 aa

184

367

PP2C

PF00481 PP2C 136-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788762.1`	Pfam	`PF00481`	PP2C	Family	136	315	4.4e-51	174.7	Protein phosphatase 2C
`XP_057788763.1`	Pfam	`PF00481`	PP2C	Family	136	354	4.2e-58	197.7	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932779.1
CAGAGCTAAAATTCATTTCACTGAAATTGACGGAAACGCACAGCAAAAAGATTTTTTCAGCTCGAAAAAGAAAAGGATTATTTAATTAATTAAGTGGGAAAAAAAAATCATGCATTGTGCTGTAGCAGCAGTAAGCTCTCCGATATTCACGCCGTCGCCGAGAAAGATGTCGCCGGTTTTCTGCAAGCCTGCCACCGCTCCGCCGCCGTTGTCAATCTCTTCTTCGTCGTCGTTTTTGATCAAACAAGTAGCGCAGACCT...

XM_057932780.1
GAGCTAAAATTCATTTCACTGAAATTGACGGAAACGCACAGCAAAAAGATTTTTTCAGCTCGAAAAAGAAAAGGATTATTTAATTAATTAAGTGGGAAAAAAAAATCATGCATTGTGCTGTAGCAGCAGTAAGCTCTCCGATATTCACGCCGTCGCCGAGAAAGATGTCGCCGGTTTTCTGCAAGCCTGCCACCGCTCCGCCGCCGTTGTCAATCTCTTCTTCGTCGTCGTTTTTGATCAAACAAGTAGCGCAGACCTTG...

CDS

2 records

下载 CDS FASTA

LOC131005726
ATGCATTGTGCTGTAGCAGCAGTAAGCTCTCCGATATTCACGCCGTCGCCGAGAAAGATGTCGCCGGTTTTCTGCAAGCCTGCCACCGCTCCGCCGCCGTTGTCAATCTCTTCTTCGTCGTCGTTTTTGATCAAACAAGTAGCGCAGACCTTGAATGGAGGAGGAGCTGGAGAAGAAGAAGAGGGAGTAGTGCCGTCGAAGGCGTCGCCGCCCGTGTTGAAGCGGAAAAGGCCGGCGAGGATTGATATTCCGGCCACAAG...

Protein

2 records

下载 Protein FASTA

XP_057788762.1
MHCAVAAVSSPIFTPSPRKMSPVFCKPATAPPPLSISSSSSFLIKQVAQTLNGGGAGEEEEGVVPSKASPPVLKRKRPARIDIPATSLRIEEAKTTSNLDRSSEVVFEGEGYSVYSKRGKRGGVLEDRYTADLGTHGDSKQAFFGVFDGHGGAGAAEFASTSLEKNIMNQVLKRGDEIEEAVKEGYLATDSEFLKKDIRGGTCCVTALVHKGDLVVSNTGDCRAVMSRGGVAEALTVDHRPSLEEERERIESLGGYVDCC...

XP_057788763.1
MHCAVAAVSSPIFTPSPRKMSPVFCKPATAPPPLSISSSSSFLIKQVAQTLNGGGAGEEEEGVVPSKASPPVLKRKRPARIDIPATSLRIEEAKTTSNLDRSSEVVFEGEGYSVYSKRGKRGGVLEDRYTADLGTHGDSKQAFFGVFDGHGGAGAAEFASTSLEKNIMNQVLKRGDEIEEAVKEGYLATDSEFLKKDIRGGTCCVTALVHKGDLVVSNTGDCRAVMSRGGVAEALTVDHRPSLEEERERIESLGGYVDCC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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