当前解析结果
SmilChr01G005404| 统一新 Gene ID | SmilChr01G005404 |
|---|---|
| 名称 | SmilChr01G005404 |
| 描述 | RING-H2 finger protein ATL66 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71303109 - 71304261 / - |
| NCBI Gene ID | LOC131005731 |
|---|---|
| GeneID | 131005731 |
| locus_tag | - |
| NCBI Name | LOC131005731 |
| 原始查询 | SmilChr01G005404 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RING-H2 finger protein ATL66 |
| 产物 | RING-H2 finger protein ATL66 |
| Arabidopsis | AT3G11110 (AT3G11110)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820282] identity=49.4; qcov=1.01; evalue=6.34e-39; confidence=medium |
| Rice | Os01g0830900- identity=39.4; qcov=1.04; evalue=9.39e-29; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005731 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.40000 | XP_057788769.1 |
| 2 | Endosome | 内体 | 0.40000 | XP_057788769.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057788769.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057788769.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788769.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71303366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:71303393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B138,B75 |
Chr1:71303397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B128,B140,B95 |
Chr1:71303424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B61,C44 |
Chr1:71303454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B48,D4 |
Chr1:71303493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:71303504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B120,B140,B77 |
Chr1:71303521 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B70 |
Chr1:71303521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:71303523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B115 |
Chr1:71303533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B120,B45 |
Chr1:71303593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788769.1PF12861
zf-ANAPC11 100-150 aa
PF17123
zf-RING_11 102-131 aa
PF13923
zf-C3HC4_2 102-144 aa
PF12678
zf-rbx1 102-145 aa
PF13639
zf-RING_2 102-145 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788769.1 |
Pfam | PF12861 |
zf-ANAPC11 | Domain | 100 | 150 | 1e-07 | 32.6 | Anaphase-promoting complex subunit 11 RING-H2 finger |
XP_057788769.1 |
Pfam | PF17123 |
zf-RING_11 | Domain | 102 | 131 | 6.4e-09 | 36.1 | RING-like zinc finger |
XP_057788769.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 102 | 144 | 8.6e-07 | 29.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057788769.1 |
Pfam | PF12678 |
zf-rbx1 | Domain | 102 | 145 | 4.6e-10 | 40.3 | RING-H2 zinc finger domain |
XP_057788769.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 102 | 145 | 1.3e-14 | 54.9 | Ring finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。