当前解析结果
SmilChr01G005418| 统一新 Gene ID | SmilChr01G005418 |
|---|---|
| 名称 | SmilChr01G005418 |
| 描述 | GCN5-related N-acetyltransferase 8-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71389108 - 71390183 / + |
| NCBI Gene ID | LOC131005745 |
|---|---|
| GeneID | 131005745 |
| locus_tag | - |
| NCBI Name | LOC131005745 |
| 原始查询 | SmilChr01G005418 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GCN5-related N-acetyltransferase 8-like |
| 产物 | GCN5-related N-acetyltransferase 8-like |
| Arabidopsis | AT2G39020 (AT2G39020)Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818488] identity=62.8; qcov=0.963; evalue=3.98e-99; confidence=high |
| Rice | Os03g0151600- identity=54.4; qcov=0.896; evalue=2e-72; confidence=high |
| GO | GO:0008080 (N-acetyltransferase activity) |
| KEGG | - |
| Pfam | PF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788784.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057788784.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057788784.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788784.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788784.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71389389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B65,B8,B82,C34,D9 |
Chr1:71389413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B19,B24,B38,B95,D1 |
Chr1:71389415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B19,B38,B65,B95,D1 |
Chr1:71389424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B74,C28,C46 |
Chr1:71389449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr1:71389461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B33,B76,C23,C48,D3 |
Chr1:71389477 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,B72 |
Chr1:71389490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,A6,B94,C55 |
Chr1:71389532 |
GC |
* |
1bp_deletion | CDS_variant | 1 | B86 |
Chr1:71389613 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B36,B94,C80 |
Chr1:71389640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B73,D3 |
Chr1:71389664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B55,C14,C56,C66,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788784.1PF00583
Acetyltransf_1 134-215 aa
PF13508
Acetyltransf_7 143-215 aa
PF08445
FR47 155-217 aa
PF13673
Acetyltransf_10 159-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788784.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 134 | 215 | 1.5e-15 | 58.2 | Acetyltransferase (GNAT) family |
XP_057788784.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 143 | 215 | 1.3e-09 | 39.0 | Acetyltransferase (GNAT) domain |
XP_057788784.1 |
Pfam | PF08445 |
FR47 | Family | 155 | 217 | 4.7e-06 | 27.2 | FR47-like protein |
XP_057788784.1 |
Pfam | PF13673 |
Acetyltransf_10 | Domain | 159 | 215 | 3.7e-07 | 30.9 | Acetyltransferase (GNAT) domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。