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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005444

染色体: Chr01 坐标: 71530944-71536352 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005444
名称SmilChr01G005444
描述zinc finger CCCH domain-containing protein ZFN-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向71530944 - 71536352 / -

ID 对照

NCBI Gene IDLOC131005778
GeneID131005778
locus_tag-
NCBI NameLOC131005778
原始查询SmilChr01G005444

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger CCCH domain-containing protein ZFN-like
产物zinc finger CCCH domain-containing protein ZFN-like
ArabidopsisAT3G02830 (ZFN1)
zinc finger protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:821230]
identity=62.3; qcov=1.02; evalue=9.3e-172; confidence=high
RiceOs11g0472000 (OsC3H63)
-
identity=61.3; qcov=1.04; evalue=9.04e-175; confidence=high
GOGO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG-
PfamPF00642 (zf-CCCH); PF14608 (zf-CCCH_2)
InterPro-
eggNOG-
NRGeneID:131005778

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057788842.1
2 Cytoplasm 细胞质 0.40000 XP_057788842.1
3 Chromosome 染色体 0.00000 XP_057788842.1
4 Centromere 着丝粒 0.00000 XP_057788842.1
5 Chromatin 染色质 0.00000 XP_057788842.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:71531394 G A EMS_canonical_SNV CDS_variant 2 A11,C75
Chr1:71531424 G A EMS_canonical_SNV CDS_variant 3 A11,B109,C8
Chr1:71533020 C T EMS_canonical_SNV CDS_variant 3 B21,C3,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788842.1
415 aa
N
1
208
415
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 40-65 aa PF14608 zf-CCCH_2 43-64 aa PF00642 zf-CCCH 86-110 aa PF14608 zf-CCCH_2 89-109 aa PF00642 zf-CCCH 134-156 aa PF14608 zf-CCCH_2 135-155 aa PF00642 zf-CCCH 278-304 aa PF14608 zf-CCCH_2 283-303 aa PF00642 zf-CCCH 324-350 aa PF14608 zf-CCCH_2 329-349 aa
XP_057788843.1
394 aa
N
1
197
394
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 19-44 aa PF14608 zf-CCCH_2 22-43 aa PF00642 zf-CCCH 65-89 aa PF14608 zf-CCCH_2 68-88 aa PF00642 zf-CCCH 113-135 aa PF14608 zf-CCCH_2 114-134 aa PF00642 zf-CCCH 257-283 aa PF14608 zf-CCCH_2 262-282 aa PF00642 zf-CCCH 303-329 aa PF14608 zf-CCCH_2 308-328 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057788842.1 Pfam PF00642 zf-CCCH Family 40 65 8.9e-46 153.7 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788842.1 Pfam PF14608 zf-CCCH_2 Domain 43 64 5.3e-20 71.8 RNA-binding, Nab2-type zinc finger
XP_057788842.1 Pfam PF00642 zf-CCCH Family 86 110 8.9e-46 153.7 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788842.1 Pfam PF14608 zf-CCCH_2 Domain 89 109 5.3e-20 71.8 RNA-binding, Nab2-type zinc finger
XP_057788842.1 Pfam PF00642 zf-CCCH Family 134 156 8.9e-46 153.7 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788842.1 Pfam PF14608 zf-CCCH_2 Domain 135 155 5.3e-20 71.8 RNA-binding, Nab2-type zinc finger
XP_057788842.1 Pfam PF00642 zf-CCCH Family 278 304 8.9e-46 153.7 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788842.1 Pfam PF14608 zf-CCCH_2 Domain 283 303 5.3e-20 71.8 RNA-binding, Nab2-type zinc finger
XP_057788842.1 Pfam PF00642 zf-CCCH Family 324 350 8.9e-46 153.7 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788842.1 Pfam PF14608 zf-CCCH_2 Domain 329 349 5.3e-20 71.8 RNA-binding, Nab2-type zinc finger
XP_057788843.1 Pfam PF00642 zf-CCCH Family 19 44 6.5e-46 154.1 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788843.1 Pfam PF14608 zf-CCCH_2 Domain 22 43 3.8e-20 72.3 RNA-binding, Nab2-type zinc finger
XP_057788843.1 Pfam PF00642 zf-CCCH Family 65 89 6.5e-46 154.1 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788843.1 Pfam PF14608 zf-CCCH_2 Domain 68 88 3.8e-20 72.3 RNA-binding, Nab2-type zinc finger
XP_057788843.1 Pfam PF00642 zf-CCCH Family 113 135 6.5e-46 154.1 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788843.1 Pfam PF14608 zf-CCCH_2 Domain 114 134 3.8e-20 72.3 RNA-binding, Nab2-type zinc finger
XP_057788843.1 Pfam PF00642 zf-CCCH Family 257 283 6.5e-46 154.1 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788843.1 Pfam PF14608 zf-CCCH_2 Domain 262 282 3.8e-20 72.3 RNA-binding, Nab2-type zinc finger
XP_057788843.1 Pfam PF00642 zf-CCCH Family 303 329 6.5e-46 154.1 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057788843.1 Pfam PF14608 zf-CCCH_2 Domain 308 328 3.8e-20 72.3 RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057932859.1
GTGTGAGAGAGTGAATGAGTGGTTTGGTTGGTTGATTTTTATTCTCTCTCCCTCTCATTTTCCTCTGCTTTTCTTTTTCCTTTTTTTTCCTTTTTTTCTCGTATAGCACTATTTTTCTCTTTCTGTGGAGGAGAGAGAACGCCATTACGCCACCACCTAATTGCTCCATTCCTTTCCCCTGCGCCTTTATTCGTGGATGCTACACGCACACAATTTCGCCCATCTCACCGTTTGCTACTGCTACTGTGCGCAGCTGCTCG...
XM_057932860.1
TATTCTCTCTCCCTCTCATTTTCCTCTGCTTTTCTTTTTCCTTTTTTTTCCTTTTTTTCTCGTATAGCACTATTTTTCTCTTTCTGTGGAGGAGAGAGAACGCCATTACGCCACCACCTAATTGCTCCATTCCTTTCCCCTGCGCCTTTATTCGTGGATGCTACACGCACACAATTTCGCCCATCTCACCGTTTGCTACTGCTACTGTGCGCAGCTGCTCGCGGAGGTCATGTCATGCGGATGCGGGTGGTGAATTCCAA...

CDS

2 records

下载 CDS FASTA
LOC131005778
ATGTCGCGAGCTTCGGTCACCGCCGCTTCCTCCTCCATGCACCACCAAGATGTTTTGTGGCAAATGAACATGAGATCAAGGGAACAGATGGAATCTGGACCTTATCCAGTGCGTGAAGGTGAACCGGATTGTTCATACTACATTCGAACAGGAGTATGCCGATTTGGGCCTACATGTCGATTTAACCACCCTCCCAACAGGAAACTGGCTATTGCCACAGCAAGGATGAAAGGTGAATATCCAGAAAGGATAGGACAACC...
LOC131005778
ATGAACATGAGATCAAGGGAACAGATGGAATCTGGACCTTATCCAGTGCGTGAAGGTGAACCGGATTGTTCATACTACATTCGAACAGGAGTATGCCGATTTGGGCCTACATGTCGATTTAACCACCCTCCCAACAGGAAACTGGCTATTGCCACAGCAAGGATGAAAGGTGAATATCCAGAAAGGATAGGACAACCTGAATGTCAGTATTATTTAAAAACAGGGACATGCAAGTTTGGAGCCACATGCAAATTTCATCA...

Protein

2 records

下载 Protein FASTA
XP_057788842.1
MSRASVTAASSSMHHQDVLWQMNMRSREQMESGPYPVREGEPDCSYYIRTGVCRFGPTCRFNHPPNRKLAIATARMKGEYPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGITGRVALNVLGYPLRPNEMECAYYIRNGQCKFGSTCKFHHPQPSNMMVSLRGSAVYPPIHSPTTSQLSYPLSRASFIASPRWQSPSSYAPLVMQQGVVSVPGWNTYSGQLGSVLSSENQHPSAVNIQSDGASHQGDSGNVASEFGS...
XP_057788843.1
MNMRSREQMESGPYPVREGEPDCSYYIRTGVCRFGPTCRFNHPPNRKLAIATARMKGEYPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGITGRVALNVLGYPLRPNEMECAYYIRNGQCKFGSTCKFHHPQPSNMMVSLRGSAVYPPIHSPTTSQLSYPLSRASFIASPRWQSPSSYAPLVMQQGVVSVPGWNTYSGQLGSVLSSENQHPSAVNIQSDGASHQGDSGNVASEFGSVPMGYYSFQKDNVFPERPGQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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