Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005445`

染色体: Chr01 坐标: 71539560-71544641 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005445`
名称	SmilChr01G005445
描述	uncharacterized SmilChr01G005445
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71539560 - 71544641 / `-`

ID 对照

NCBI Gene ID	`LOC131005776`
GeneID	`131005776`
locus_tag	`-`
NCBI Name	`LOC131005776`
原始查询	`SmilChr01G005445`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0544600; species=rice; confidence=medium
产物	hit=Os11g0544600; species=rice; confidence=medium
Arabidopsis	`AT4G08310` (AT4G08310) DNA ligase [Source:NCBI gene (formerly Entrezgene);Acc:826385] identity=42.4; qcov=0.812; evalue=5.08e-83; confidence=medium
Rice	`Os11g0544600` - identity=44.4; qcov=0.794; evalue=7.03e-90; confidence=medium
GO	GO:0005634 (nucleus)
KEGG	-
Pfam	PF09649 (CHZ)
InterPro	-
eggNOG	-
NR	GeneID:131005776

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788839.1`
2	Nucleoplasm	核质	1.00000	`XP_057788839.1`
3	Nucleolus	核仁	0.60000	`XP_057788839.1`
4	Chromosome	染色体	0.40000	`XP_057788839.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.40000	`XP_057788839.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71539799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C37
`Chr1:71540180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C20,C59
`Chr1:71540187`	`TCC`	`T`	2bp_deletion	frameshift_variant	2	C20,C59
`Chr1:71540187`	`TCC`	`T`	2bp_deletion	CDS_variant	2	C20,C59
`Chr1:71540195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B132,B136
`Chr1:71540266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B29,C72,C76
`Chr1:71540269`	`C`	`CTT`	2bp_insertion	frameshift_variant	1	C1
`Chr1:71540269`	`C`	`CTT`	2bp_insertion	CDS_variant	1	C1
`Chr1:71541659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr1:71541892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B6,C84
`Chr1:71541945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B132,B136,B46
`Chr1:71542012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788839.1

529 aa

264

529

CHZ

PF09649 CHZ 388-416 aa

XP_057788840.1

528 aa

264

528

CHZ

PF09649 CHZ 387-415 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788839.1`	Pfam	`PF09649`	CHZ	Domain	388	416	1.1e-07	31.8	Histone chaperone domain CHZ
`XP_057788840.1`	Pfam	`PF09649`	CHZ	Domain	387	415	1.1e-07	31.9	Histone chaperone domain CHZ

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932857.1
AACAGAGTCTGAAAACATCAAAGTAAGCTGCGAAGCAAAACCACATACGACGTCGTGCAGTAGTTTGTGCGAAGCAAAAATCACTTCGAATTGAAACATAAAATCCCCCCAAAATTTCAAAACCCTCACTCTGATCGGCAACTTCCACCGCCACTTCCGCCGCCGCTGTAAAACTGCCTTTCTCTCGGGAACAACTTAACAAGTTATGGCGGACGTAAACGGAGAGAAGCAGGCGCTTGAGCAGCAGCTGGAGCGCGCAG...

XM_057932856.1
AACAGAGTCTGAAAACATCAAAGTAAGCTGCGAAGCAAAACCACATACGACGTCGTGCAGTAGTTTGTGCGAAGCAAAAATCACTTCGAATTGAAACATAAAATCCCCCCAAAATTTCAAAACCCTCACTCTGATCGGCAACTTCCACCGCCACTTCCGCCGCCGCTGTAAAACTGCCTTTCTCTCGGGAACAACTTAACAAGTTATGGCGGACGTAAACGGAGAGAAGCAGGCGCTTGAGCAGCAGCTGGAGCGCGCAG...

CDS

2 records

下载 CDS FASTA

LOC131005776
ATGGCGGACGTAAACGGAGAGAAGCAGGCGCTTGAGCAGCAGCTGGAGCGCGCAGTGAGCGCTCGTCTTCAGCATTTCAAGGACCAAGCCGATTCACTGACGTTGGAGTCCGTAAGGAGACTCTTGGAGAAGGATTTGGGCCTTGAGAAATTTGCGCTCGATGCACACAAAAGATTCATTCGCCAATACTTGGAAAAGATAATGGAAGATGCTGATGAAAGCAATTCTAACCCGACAACTGCAAACATGGACACAGATGA...

Protein

2 records

下载 Protein FASTA

XP_057788839.1
MADVNGEKQALEQQLERAVSARLQHFKDQADSLTLESVRRLLEKDLGLEKFALDAHKRFIRQYLEKIMEDADESNSNPTTANMDTDEQLSMEEEKVLPKQQEAKSDPKKASPGNEETMEDSPIMGVLTSKSEVDTQSSLSKSTIKKAILERTDHLQANSDKITLAGVRRLLEEDLGLDKNTLDAFKNFISLQVDQVLEGAKSVKDVKKKASEDVKSRKLKKVSSKEDSDTSQSGSDEMSDKVKSRKEAAPKRNIKKLEQP...

XP_057788840.1
MADVNGEKQALEQQLERAVSARLQHFKDQADSLTLESVRRLLEKDLGLEKFALDAHKRFIRQYLEKIMEDADESNSNPTTANMDTDEQLSMEEEKVLPKQQEAKSDPKKASPGNEETMEDSPIMGVLTSKSEVDTQSSLSKSTIKKAILERTDHLQANSDKITLAGVRRLLEEDLGLDKNTLDAFKNFISLQVDQVLEGAKSVKDVKKKASEDVKSRKLKKVSSKEDSDTSQSGSDEMSDKVKSRKEAAPKRNIKKLEQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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