当前解析结果
SmilChr01G005451| 统一新 Gene ID | SmilChr01G005451 |
|---|---|
| 名称 | SmilChr01G005451 |
| 描述 | coatomer subunit beta-1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71563624 - 71569232 / - |
| NCBI Gene ID | LOC131005773 |
|---|---|
| GeneID | 131005773 |
| locus_tag | - |
| NCBI Name | LOC131005773 |
| 原始查询 | SmilChr01G005451 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | coatomer subunit beta-1-like |
| 产物 | coatomer subunit beta-1-like |
| Arabidopsis | AT4G31480 (AT4G31480)Coatomer, beta subunit [Source:NCBI gene (formerly Entrezgene);Acc:829275] identity=80.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os11g0174000- identity=77.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005198 (structural molecule activity); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0030126 (COPI vesicle coat) |
| KEGG | - |
| Pfam | PF01602 (Adaptin_N); PF07718 (Coatamer_beta_C); PF12717 (Cnd1); PF14806 (Coatomer_b_Cpla) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005773 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057788827.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057788827.1 |
| 3 | Vesicle | 囊泡 | 0.80000 | XP_057788827.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057788827.1 |
| 5 | Endocytic vesicle | Endocytic vesicle | 0.20000 | XP_057788827.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71564241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B51,B87,C51,C86 |
Chr1:71564381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr1:71564562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,C6 |
Chr1:71564581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,C17,C60 |
Chr1:71564596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:71565413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:71565505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B76,C22 |
Chr1:71565508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B76,C22 |
Chr1:71565702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:71566300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,C17,C60,D10 |
Chr1:71566639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:71566657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788827.1PF01602
Adaptin_N 18-468 aa
PF12717
Cnd1 112-210 aa
PF07718
Coatamer_beta_C 669-807 aa
PF14806
Coatomer_b_Cpla 813-940 aa
XP_057788828.1PF01602
Adaptin_N 18-468 aa
PF12717
Cnd1 112-210 aa
PF07718
Coatamer_beta_C 669-807 aa
PF14806
Coatomer_b_Cpla 813-940 aa
XP_057788829.1PF01602
Adaptin_N 18-468 aa
PF12717
Cnd1 112-210 aa
PF07718
Coatamer_beta_C 669-807 aa
PF14806
Coatomer_b_Cpla 813-940 aa
XP_057788830.1PF01602
Adaptin_N 18-468 aa
PF12717
Cnd1 112-210 aa
PF07718
Coatamer_beta_C 669-807 aa
PF14806
Coatomer_b_Cpla 813-940 aa
XP_057788831.1PF01602
Adaptin_N 18-468 aa
PF12717
Cnd1 112-210 aa
PF07718
Coatamer_beta_C 669-807 aa
PF14806
Coatomer_b_Cpla 813-940 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788827.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 18 | 468 | 5.4e-87 | 293.3 | Adaptin N terminal region |
XP_057788827.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 112 | 210 | 2.1e-06 | 28.6 | non-SMC mitotic condensation complex subunit 1 |
XP_057788827.1 |
Pfam | PF07718 |
Coatamer_beta_C | Domain | 669 | 807 | 6.9e-57 | 191.9 | Coatomer beta C-terminal region |
XP_057788827.1 |
Pfam | PF14806 |
Coatomer_b_Cpla | Domain | 813 | 940 | 5.4e-58 | 195.2 | Coatomer beta subunit appendage platform |
XP_057788828.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 18 | 468 | 5.4e-87 | 293.3 | Adaptin N terminal region |
XP_057788828.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 112 | 210 | 2.1e-06 | 28.6 | non-SMC mitotic condensation complex subunit 1 |
XP_057788828.1 |
Pfam | PF07718 |
Coatamer_beta_C | Domain | 669 | 807 | 6.9e-57 | 191.9 | Coatomer beta C-terminal region |
XP_057788828.1 |
Pfam | PF14806 |
Coatomer_b_Cpla | Domain | 813 | 940 | 5.4e-58 | 195.2 | Coatomer beta subunit appendage platform |
XP_057788829.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 18 | 468 | 5.4e-87 | 293.3 | Adaptin N terminal region |
XP_057788829.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 112 | 210 | 2.1e-06 | 28.6 | non-SMC mitotic condensation complex subunit 1 |
XP_057788829.1 |
Pfam | PF07718 |
Coatamer_beta_C | Domain | 669 | 807 | 6.9e-57 | 191.9 | Coatomer beta C-terminal region |
XP_057788829.1 |
Pfam | PF14806 |
Coatomer_b_Cpla | Domain | 813 | 940 | 5.4e-58 | 195.2 | Coatomer beta subunit appendage platform |
XP_057788830.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 18 | 468 | 5.4e-87 | 293.3 | Adaptin N terminal region |
XP_057788830.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 112 | 210 | 2.1e-06 | 28.6 | non-SMC mitotic condensation complex subunit 1 |
XP_057788830.1 |
Pfam | PF07718 |
Coatamer_beta_C | Domain | 669 | 807 | 6.9e-57 | 191.9 | Coatomer beta C-terminal region |
XP_057788830.1 |
Pfam | PF14806 |
Coatomer_b_Cpla | Domain | 813 | 940 | 5.4e-58 | 195.2 | Coatomer beta subunit appendage platform |
XP_057788831.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 18 | 468 | 5.4e-87 | 293.3 | Adaptin N terminal region |
XP_057788831.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 112 | 210 | 2.1e-06 | 28.6 | non-SMC mitotic condensation complex subunit 1 |
XP_057788831.1 |
Pfam | PF07718 |
Coatamer_beta_C | Domain | 669 | 807 | 6.9e-57 | 191.9 | Coatomer beta C-terminal region |
XP_057788831.1 |
Pfam | PF14806 |
Coatomer_b_Cpla | Domain | 813 | 940 | 5.4e-58 | 195.2 | Coatomer beta subunit appendage platform |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。