Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005459`

染色体: Chr01 坐标: 71609114-71614037 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005459`
名称	SmilChr01G005459
描述	probable membrane-associated 30 kDa protein, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71609114 - 71614037 / `-`

ID 对照

NCBI Gene ID	`LOC131005781`
GeneID	`131005781`
locus_tag	`-`
NCBI Name	`LOC131005781`
原始查询	`SmilChr01G005459`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable membrane-associated 30 kDa protein, chloroplastic
产物	probable membrane-associated 30 kDa protein%2C chloroplastic
Arabidopsis	`AT1G65260` (PTAC4) plastid transcriptionally active 4 [Source:NCBI gene (formerly Entrezgene);Acc:842833] identity=73.4; qcov=0.923; evalue=5.6e-155; confidence=high
Rice	`Os01g0895100` (VIPP1) probable membrane-associated 30 kDa protein, chloroplastic [Source:NCBI gene (formerly Entrezgene);Acc:4324967] identity=70; qcov=1.01; evalue=2.27e-154; confidence=high
GO	-
KEGG	-
Pfam	PF04012 (PspA_IM30)
InterPro	-
eggNOG	-
NR	GeneID:131005781

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788845.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057788845.1`
3	Chloroplast membrane	叶绿体膜	0.40000	`XP_057788846.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057788845.1`
5	Nucleus	细胞核	0.00000	`XP_057788846.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71609342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr1:71609381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr1:71609478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr1:71609492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:71611066`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788845.1

344 aa

172

344

PspA_IM30

PF04012 PspA_IM30 72-285 aa

XP_057788846.1

326 aa

163

326

PspA_IM30

PF04012 PspA_IM30 72-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788845.1`	Pfam	`PF04012`	PspA_IM30	Family	72	285	3.2e-54	184.6	PspA/IM30 family
`XP_057788846.1`	Pfam	`PF04012`	PspA_IM30	Family	72	285	2.1e-54	185.2	PspA/IM30 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932863.1
ATTAGTAAATCTGATCCTTCCTCGCCTTACAAACCACAAACAAAAAGAACAATTAAATCGGGAAAAAAAAAGAAGAAGAAGAAGAAAAAAACAGAAAACCCGAAAGCAAGAGCCACTGTGATTCTTGCAGAACTATTTCGCTCAATCTTCTTGCAATATTTGATTGATTCAGAGAGCTTCTGTCTTCTGCTCTCTCCATCAAGCTGCGTAAATTCATTTTTGCGGAGAAAATAAATAAAAGAATAAAAGAAGACAACAAT...

XM_057932862.1
TTCCTCGCCTTACAAACCACAAACAAAAAGAACAATTAAATCGGGAAAAAAAAAGAAGAAGAAGAAGAAAAAAACAGAAAACCCGAAAGCAAGAGCCACTGTGATTCTTGCAGAACTATTTCGCTCAATCTTCTTGCAATATTTGATTGATTCAGAGAGCTTCTGTCTTCTGCTCTCTCCATCAAGCTGCGTAAATTCATTTTTGCGGAGAAAATAAATAAAAGAATAAAAGAAGACAACAATTATTGACGGTGATGGCC...

CDS

2 records

下载 CDS FASTA

LOC131005781
ATGGCCGTAAGAGCGCCGATAGCAGGGATAAGCATGGCTTCCTCTACGGTTAGCCCCCCTGCTCCGTCGTGCAATAGAGGGGTCATTGTGCCGTTCAGGCCATCTTTTTTCGGTCGTGGAGTGGGTACTCCGATATATACAGCTGTACGACTGTCTTACTCCAGTAGATCCCGATGTAACAGCCTTGGTGGGGGTGGACTTGGTACTCAGATGAATCTTTTTGATCGGTTTGCTAGAGTTGTTAAGTCATATGCAAATGC...

Protein

2 records

下载 Protein FASTA

XP_057788845.1
MAVRAPIAGISMASSTVSPPAPSCNRGVIVPFRPSFFGRGVGTPIYTAVRLSYSSRSRCNSLGGGGLGTQMNLFDRFARVVKSYANAVISSFEDPEKILEQTVIEMNDDLIKLRQATAQVLASQKQMENKYKAAQQASQDWYARAQLALSKGDEDLAREALKRRKSYADNANSLKAQLDQQKGVVENLVSNTRLLESKIQEAKSKKETLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMAMESQAEALNQLTS...

XP_057788846.1
MAVRAPIAGISMASSTVSPPAPSCNRGVIVPFRPSFFGRGVGTPIYTAVRLSYSSRSRCNSLGGGGLGTQMNLFDRFARVVKSYANAVISSFEDPEKILEQTVIEMNDDLIKLRQATAQVLASQKQMENKYKAAQQASQDWYARAQLALSKGDEDLAREALKRRKSYADNANSLKAQLDQQKGVVENLVSNTRLLESKIQEAKSKKETLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMAMESQAEALNQLTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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