当前解析结果
SmilChr01G005465| 统一新 Gene ID | SmilChr01G005465 |
|---|---|
| 名称 | SmilChr01G005465 |
| 描述 | acyl carrier protein 2, mitochondrial |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71651753 - 71654069 / - |
| NCBI Gene ID | LOC131005796 |
|---|---|
| GeneID | 131005796 |
| locus_tag | - |
| NCBI Name | LOC131005796 |
| 原始查询 | SmilChr01G005465 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | acyl carrier protein 2, mitochondrial |
| 产物 | acyl carrier protein 2%2C mitochondrial |
| Arabidopsis | AT1G65290 (mtACP2)mitochondrial acyl carrier protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:842836] identity=76; qcov=1; evalue=2e-63; confidence=high |
| Rice | Os03g0352800- identity=57.1; qcov=1.08; evalue=1.81e-47; confidence=medium |
| GO | GO:0000035 (acyl binding); GO:0000036 (acyl carrier activity); GO:0005739 (mitochondrion); GO:0006633 (fatty acid biosynthetic process) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00550 (PP-binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005796 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057788865.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.80000 | XP_057788865.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.60000 | XP_057788865.1 |
| 4 | Mitochondrion inner membrane | 线粒体内膜 | 0.60000 | XP_057788865.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788865.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71652044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,C23,D7 |
Chr1:71653840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,B79,C34 |
Chr1:71653846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B37,B79,C34 |
Chr1:71653849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B104,C11,C5,D11 |
Chr1:71653864 |
GCC |
G |
2bp_deletion | frameshift_variant | 3 | B37,B79,C34 |
Chr1:71653864 |
GCC |
G |
2bp_deletion | CDS_variant | 3 | B37,B79,C34 |
Chr1:71653868 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B37,B79,C34 |
Chr1:71653868 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B37,B79,C34 |
Chr1:71653904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788865.1PF00550
PP-binding 55-120 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788865.1 |
Pfam | PF00550 |
PP-binding | Domain | 55 | 120 | 1.8e-12 | 48.0 | Phosphopantetheine attachment site |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。