当前解析结果
SmilChr01G005472| 统一新 Gene ID | SmilChr01G005472 |
|---|---|
| 名称 | SmilChr01G005472 |
| 描述 | uncharacterized SmilChr01G005472 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71697660 - 71701511 / + |
| NCBI Gene ID | LOC131005803 |
|---|---|
| GeneID | 131005803 |
| locus_tag | - |
| NCBI Name | LOC131005803 |
| 原始查询 | SmilChr01G005472 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsSTK1; symbol=OsSTK1; hit=Os01g0832900; species=rice; confidence=high |
| 产物 | OsSTK1; symbol=OsSTK1; hit=Os01g0832900; species=rice; confidence=high |
| Arabidopsis | AT2G40120 (AT2G40120)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818603] identity=74; qcov=0.567; evalue=0; confidence=medium |
| Rice | Os01g0832900 (OsSTK1)- identity=63.8; qcov=0.71; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0018105 (peptidyl-serine phosphorylation); GO:0018107 (peptidyl-threonine phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005803 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057788873.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057788873.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057788873.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788873.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788873.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71698032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C25,C64 |
Chr1:71698178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B24,B71,B82,C62,C80 |
Chr1:71698849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:71698966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C19 |
Chr1:71699284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:71699329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:71699759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:71699865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C53 |
Chr1:71699881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr1:71699906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B24,B71,B82,C62,C80 |
Chr1:71700222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:71700741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788873.1PF00069
Pkinase 308-609 aa
PF07714
PK_Tyr_Ser-Thr 311-508 aa
XP_057788874.1PF00069
Pkinase 308-591 aa
PF07714
PK_Tyr_Ser-Thr 354-490 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788873.1 |
Pfam | PF00069 |
Pkinase | Domain | 308 | 609 | 1.8e-50 | 172.5 | Protein kinase domain |
XP_057788873.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 311 | 508 | 4.3e-18 | 66.3 | Protein tyrosine and serine/threonine kinase |
XP_057788874.1 |
Pfam | PF00069 |
Pkinase | Domain | 308 | 591 | 5.9e-44 | 151.1 | Protein kinase domain |
XP_057788874.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 354 | 490 | 2.4e-11 | 44.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。