Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005474

染色体: Chr01 坐标: 71722317-71730941 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005474
名称SmilChr01G005474
描述protein ZINC INDUCED FACILITATOR-LIKE 1-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向71722317 - 71730941 / -

ID 对照

NCBI Gene IDLOC131005806
GeneID131005806
locus_tag-
NCBI NameLOC131005806
原始查询SmilChr01G005474

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein ZINC INDUCED FACILITATOR-LIKE 1-like
产物protein ZINC INDUCED FACILITATOR-LIKE 1-like
ArabidopsisAT5G13750 (ZIFL1)
zinc induced facilitator-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:831220]
identity=63; qcov=0.992; evalue=0; confidence=high
RiceOs11g0135900 (OsZIFL7)
-
identity=60; qcov=0.969; evalue=0; confidence=high
GOGO:0005886 (plasma membrane); GO:0009705 (plant-type vacuole membrane); GO:0022821 (solute:potassium antiporter activity); GO:0055085 (transmembrane transport); GO:0090333 (regulation of stomatal closure)
KEGG-
PfamPF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:131005806

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057788876.1
2 Vacuole membrane 液泡膜 1.00000 XP_057788876.1
3 Cell membrane 细胞膜 0.20000 XP_057788876.1
4 Nucleus 细胞核 0.00000 XP_057788876.1
5 Chromosome 染色体 0.00000 XP_057788876.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:71722630 G A EMS_canonical_SNV stop_gained 13 A11,B10,B110,B23,B33,B51,B59,B82,B87,C22,C53,C60,D6
Chr1:71722679 G A EMS_canonical_SNV CDS_variant 3 A25,B27,B63
Chr1:71723018 G A EMS_canonical_SNV CDS_variant 3 A25,B27,B63
Chr1:71723902 G A EMS_canonical_SNV CDS_variant 1 C61
Chr1:71724055 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:71724094 C T EMS_canonical_SNV CDS_variant 1 B122
Chr1:71725072 C T EMS_canonical_SNV CDS_variant 2 B1,C58
Chr1:71725850 C T EMS_canonical_SNV CDS_variant 5 A14,B125,B90,C14,C33
Chr1:71725862 G A EMS_canonical_SNV CDS_variant 1 B34
Chr1:71727950 C T EMS_canonical_SNV CDS_variant 5 B108,B71,C23,C62,C80
Chr1:71728109 G A EMS_canonical_SNV CDS_variant 5 B128,B75,B88,C10,C3
Chr1:71728145 G A EMS_canonical_SNV CDS_variant 4 A25,B131,B27,B63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057788876.1
485 aa
N
1
242
485
MFS_1
Sugar_tr
C
PF07690 MFS_1 43-434 aa PF00083 Sugar_tr 66-238 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057788876.1 Pfam PF07690 MFS_1 Family 43 434 7.5e-34 117.9 Major Facilitator Superfamily
XP_057788876.1 Pfam PF00083 Sugar_tr Family 66 238 5.9e-13 49.2 Sugar (and other) transporter

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057932893.1
TTTTAAGAAGAGCAACTTTTTTTTTTTGTTTTTTATTTGAAGAAAGAGTAGTGGCTTTCATATTTAGAAAAACTTAAAAGCTGCTTGTCGTTTCCCACGCTTATCATTATCAATTTCCCTTCAAATATGTTTCATGCGTATGTATCTCTATATATTCACTTACATATATATACATACTATATGATTGGAGGTGTCTCTGAGTATTATAGCGTGAGAGAGAAAGAATGGCGTCGGCTGAATATGCGGAGAGTTTACTCATA...

CDS

1 records

下载 CDS FASTA
LOC131005806
ATGGCGTCGGCTGAATATGCGGAGAGTTTACTCATAAAAGACGACTACGTCGAGGGATGCGCGGGATGTGAGGTTGATCGGCGGAAACAATTACAGAGAGGGCTGCCAATCAAGCAAATCTTCACTGTCTGGATCATTGTGCTCGCCACTGCTCTGACAATATCATCTCTCTTCCCATTCCTTTATTTCATGATAAGGGATTTTCACATTGCAACAAGAGAGGAAGATATTGGTTATTATGCCGGTTTTGTAGGGTCTGC...

Protein

1 records

下载 Protein FASTA
XP_057788876.1
MASAEYAESLLIKDDYVEGCAGCEVDRRKQLQRGLPIKQIFTVWIIVLATALTISSLFPFLYFMIRDFHIATREEDIGYYAGFVGSAYMIGRAMTSTVWGVIADRYGRKPVIIIGCVTVVVFNTLFGLSINYWMAIITRFLLGCLNGLLGPMKAYACETVRDEYQSYGLSAVSTAWGAGLVIGPALGGFLAQPADKFPGIFASDSFWTRFPYFLPCAVISIFAGIVTVACFWIPETLHTHNSGSSHSQGSSGSLESATQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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