Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005475`

染色体: Chr01 坐标: 71734846-71740612 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005475`
名称	SmilChr01G005475
描述	phosphoinositide phospholipase C 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71734846 - 71740612 / `-`

ID 对照

NCBI Gene ID	`LOC131005807`
GeneID	`131005807`
locus_tag	`-`
NCBI Name	`LOC131005807`
原始查询	`SmilChr01G005475`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoinositide phospholipase C 2-like
产物	phosphoinositide phospholipase C 2-like
Arabidopsis	`AT3G08510` (PLC2) phospholipase C 2 [Source:NCBI gene (formerly Entrezgene);Acc:819999] identity=65.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0289300` (OsPLC2) - identity=57.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0004435 (phosphatidylinositol-4,5-bisphosphate phospholipase C activity); GO:0006629 (lipid metabolic process); GO:0048015 (phosphatidylinositol-mediated signaling)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage))
Pfam	PF00168 (C2); PF00387 (PI-PLC-Y); PF00388 (PI-PLC-X); PF09279 (EF-hand_like)
InterPro	-
eggNOG	-
NR	GeneID:131005807

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057788878.1`
2	Cell membrane	细胞膜	1.00000	`XP_057788878.1`
3	Cytoplasm	细胞质	0.20000	`XP_057788878.1`
4	Nucleus	细胞核	0.00000	`XP_057788878.1`
5	Chromosome	染色体	0.00000	`XP_057788878.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71736054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:71736250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B86,B87,B9,C55
`Chr1:71736579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr1:71738031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A11,B101
`Chr1:71738509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B82
`Chr1:71738530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:71738781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,B52,B80
`Chr1:71740001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C2,C69
`Chr1:71740019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,C62
`Chr1:71740133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B82
`Chr1:71740244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B43,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788878.1

589 aa

294

589

EF-hand_like

PI-PLC-X

PI-PLC-Y

PF09279 EF-hand_like 26-101 aa PF00388 PI-PLC-X 116-258 aa PF00387 PI-PLC-Y 357-444 aa PF00168 C2 482-563 aa

XP_057788879.1

589 aa

294

589

EF-hand_like

PI-PLC-X

PI-PLC-Y

PF09279 EF-hand_like 26-101 aa PF00388 PI-PLC-X 116-258 aa PF00387 PI-PLC-Y 357-444 aa PF00168 C2 482-563 aa

XP_057788880.1

589 aa

294

589

EF-hand_like

PI-PLC-X

PI-PLC-Y

PF09279 EF-hand_like 26-101 aa PF00388 PI-PLC-X 116-258 aa PF00387 PI-PLC-Y 357-444 aa PF00168 C2 482-563 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788878.1`	Pfam	`PF09279`	EF-hand_like	Domain	26	101	1.4e-08	35.9	Phosphoinositide-specific phospholipase C, efhand-like
`XP_057788878.1`	Pfam	`PF00388`	PI-PLC-X	Family	116	258	1.4e-53	181.2	Phosphatidylinositol-specific phospholipase C, X domain
`XP_057788878.1`	Pfam	`PF00387`	PI-PLC-Y	Family	357	444	5.1e-30	104.8	Phosphatidylinositol-specific phospholipase C, Y domain
`XP_057788878.1`	Pfam	`PF00168`	C2	Domain	482	563	3.7e-12	47.1	C2 domain
`XP_057788879.1`	Pfam	`PF09279`	EF-hand_like	Domain	26	101	1.4e-08	35.9	Phosphoinositide-specific phospholipase C, efhand-like
`XP_057788879.1`	Pfam	`PF00388`	PI-PLC-X	Family	116	258	1.4e-53	181.2	Phosphatidylinositol-specific phospholipase C, X domain
`XP_057788879.1`	Pfam	`PF00387`	PI-PLC-Y	Family	357	444	5.1e-30	104.8	Phosphatidylinositol-specific phospholipase C, Y domain
`XP_057788879.1`	Pfam	`PF00168`	C2	Domain	482	563	3.7e-12	47.1	C2 domain
`XP_057788880.1`	Pfam	`PF09279`	EF-hand_like	Domain	26	101	1.4e-08	35.9	Phosphoinositide-specific phospholipase C, efhand-like
`XP_057788880.1`	Pfam	`PF00388`	PI-PLC-X	Family	116	258	1.4e-53	181.2	Phosphatidylinositol-specific phospholipase C, X domain
`XP_057788880.1`	Pfam	`PF00387`	PI-PLC-Y	Family	357	444	5.1e-30	104.8	Phosphatidylinositol-specific phospholipase C, Y domain
`XP_057788880.1`	Pfam	`PF00168`	C2	Domain	482	563	3.7e-12	47.1	C2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009095353.1
GTACATAATTATTTCTTAAAATTAGTTTTAAATACTACGTAAATAATTTTAATTTTTGTAAAAAAGAGTATGCAAAAAATAAAATAAAAATATAAATCGAGCATGACGTCGACGATAAATTTTGCAGCAAACGTTCACGCCAGCGTCGAATCCGTGGCCAATCCGCCGCGGCGGCGCCCATGCGACATCTTCCATCCTCCGAAATCAATCGCATTTTTTCTGAATTAAATTCCAACAAATTCCTCCCCTCTCCCGCAAGC...

XM_057932897.1
GTACATAATTATTTCTTAAAATTAGTTTTAAATACTACGTAAATAATTTTAATTTTTGTAAAAAAGAGTATGCAAAAAATAAAATAAAAATATAAATCGAGCATGACGTCGACGATAAATTTTGCAGCAAACGTTCACGCCAGCGTCGAATCCGTGGCCAATCCGCCGCGGCGGCGCCCATGCGACATCTTCCATCCTCCGAAATCAATCGCATTTTTTCTGAATTAAATTCCAACAAATTCCTCCCCTCTCCCGCAAGC...

CDS

3 records

下载 CDS FASTA

LOC131005807
ATGTCGGGGAAACAGACCTACCGCGTGTGCTTCTGCTTCCAGCGGCGGTTCCGGCTGGCGGCGGCGGAGGCGCCGGACGACGTGAAGGCGATGTTCTTCAAGTACACGGCGGCGAACGGGTTCATGAGCGTGGAGCAGCTGCGGCGGTTCATGGTGGAGGTGCAGAAGGAGGAGAACGCGACGCTGGAGGATGCGCAGGCGCTGATCGATGGGGTAAGCCCCCTCAATGAGCTCAAGCATCTCACATTGTTCCACAGGCG...

Protein

3 records

下载 Protein FASTA

XP_057788878.1
MSGKQTYRVCFCFQRRFRLAAAEAPDDVKAMFFKYTAANGFMSVEQLRRFMVEVQKEENATLEDAQALIDGVSPLNELKHLTLFHRRGLNVEGFFKYLFGDSNPPLNPKLGVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDIPIINALHRGVRVIELDIWPNSKRDNVEVLHGRTLTAPVKLIRCLRSIKEHAFVASEYPVVITLEDHLTPELQAKAAEMITKTFGDMLFSPDSECLSEFPSPESLKRRIIISTKPP...

XP_057788879.1
MSGKQTYRVCFCFQRRFRLAAAEAPDDVKAMFFKYTAANGFMSVEQLRRFMVEVQKEENATLEDAQALIDGVSPLNELKHLTLFHRRGLNVEGFFKYLFGDSNPPLNPKLGVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDIPIINALHRGVRVIELDIWPNSKRDNVEVLHGRTLTAPVKLIRCLRSIKEHAFVASEYPVVITLEDHLTPELQAKAAEMITKTFGDMLFSPDSECLSEFPSPESLKRRIIISTKPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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