当前解析结果
SmilChr01G005476| 统一新 Gene ID | SmilChr01G005476 |
|---|---|
| 名称 | SmilChr01G005476 |
| 描述 | phosphoinositide phospholipase C 6-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71741721 - 71749596 / - |
| NCBI Gene ID | LOC131005808 |
|---|---|
| GeneID | 131005808 |
| locus_tag | - |
| NCBI Name | LOC131005808 |
| 原始查询 | SmilChr01G005476 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoinositide phospholipase C 6-like |
| 产物 | phosphoinositide phospholipase C 6-like |
| Arabidopsis | AT2G40116 (AT2G40116)Phosphoinositide-specific phospholipase C family protein [Source:NCBI gene (formerly Entrezgene);Acc:818602] identity=59.8; qcov=1.08; evalue=0; confidence=high |
| Rice | Os03g0289300 (OsPLC2)- identity=53.6; qcov=1.06; evalue=0; confidence=high |
| GO | GO:0004435 (phosphatidylinositol-4,5-bisphosphate phospholipase C activity); GO:0006629 (lipid metabolic process); GO:0048015 (phosphatidylinositol-mediated signaling) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00168 (C2); PF00387 (PI-PLC-Y); PF00388 (PI-PLC-X) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005808 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057788881.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057788881.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057788881.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788881.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788881.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71741995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,B83 |
Chr1:71742084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr1:71742270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,C62 |
Chr1:71742279 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C39 |
Chr1:71742294 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B133,B46,B67,B81,C41 |
Chr1:71742537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,C46,C61 |
Chr1:71742540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,C33 |
Chr1:71742550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:71742613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:71743890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B52,C20,C57,C70,C87 |
Chr1:71743923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B101 |
Chr1:71744191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C40,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788881.1PF00388
PI-PLC-X 110-252 aa
PF00387
PI-PLC-Y 323-410 aa
PF00168
C2 433-535 aa
XP_057788882.1PF00388
PI-PLC-X 110-252 aa
PF00387
PI-PLC-Y 322-409 aa
PF00168
C2 432-534 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788881.1 |
Pfam | PF00388 |
PI-PLC-X | Family | 110 | 252 | 3.9e-54 | 182.9 | Phosphatidylinositol-specific phospholipase C, X domain |
XP_057788881.1 |
Pfam | PF00387 |
PI-PLC-Y | Family | 323 | 410 | 4.3e-27 | 95.3 | Phosphatidylinositol-specific phospholipase C, Y domain |
XP_057788881.1 |
Pfam | PF00168 |
C2 | Domain | 433 | 535 | 2.2e-14 | 54.2 | C2 domain |
XP_057788882.1 |
Pfam | PF00388 |
PI-PLC-X | Family | 110 | 252 | 4e-54 | 182.9 | Phosphatidylinositol-specific phospholipase C, X domain |
XP_057788882.1 |
Pfam | PF00387 |
PI-PLC-Y | Family | 322 | 409 | 4.3e-27 | 95.3 | Phosphatidylinositol-specific phospholipase C, Y domain |
XP_057788882.1 |
Pfam | PF00168 |
C2 | Domain | 432 | 534 | 2.2e-14 | 54.2 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。