Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005489`

染色体: Chr01 坐标: 71825897-71829911 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005489`
名称	SmilChr01G005489
描述	arginyl-tRNA--protein transferase 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71825897 - 71829911 / `-`

ID 对照

NCBI Gene ID	`LOC131005823`
GeneID	`131005823`
locus_tag	`-`
NCBI Name	`LOC131005823`
原始查询	`SmilChr01G005489`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	arginyl-tRNA--protein transferase 2
产物	arginyl-tRNA--protein transferase 2
Arabidopsis	`AT5G05700` (ATE1) arginine-tRNA protein transferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830454] identity=47.6; qcov=1.05; evalue=0; confidence=high
Rice	`Os05g0446800` - identity=46.2; qcov=1.04; evalue=1.48e-161; confidence=high
GO	GO:0004057 (arginyl-tRNA--protein transferase activity); GO:0005737 (cytoplasm); GO:0016598 (protein arginylation)
KEGG	-
Pfam	PF04376 (ATE_N); PF04377 (ATE_C)
InterPro	-
eggNOG	-
NR	GeneID:131005823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057788899.1`
2	Cytoplasm	细胞质	0.80000	`XP_057788900.1`
3	Cytosol	细胞质基质	0.20000	`XP_057788899.1`
4	Chromosome	染色体	0.00000	`XP_057788900.1`
5	Centromere	着丝粒	0.00000	`XP_057788900.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71826522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B90,B92,C17
`Chr1:71826674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr1:71826689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr1:71826715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C82
`Chr1:71827277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr1:71827509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,B140
`Chr1:71827516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr1:71827693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B140
`Chr1:71827700`	`T`	`TA`	1bp_insertion	frameshift_variant	72	A14,A16,A18,A19,A22,B109,B11,B115,B118,B123,B129,B131,B134,B139,B14,B15,B17,B21,B26,B29,B32,B36,B40,B42,B43,B47,B48,B54,B55,B56,B57,B65,B67,B68,B70,B71,B72,B76,B77,B84,B85,B86,B91,B94,B96,C1,C15,C23,C26,C28,C29,C33,C35,C37,C38,C40,C41,C46,C47,C5,C6,C62,C68,C71,C73,C74,C78,C79,C83,C85,C9,D1
`Chr1:71827710`	`C`	`CAG`	2bp_insertion	frameshift_variant	72	A14,A16,A18,A19,A22,B109,B11,B115,B118,B123,B129,B131,B134,B139,B14,B15,B17,B21,B26,B29,B32,B36,B40,B42,B43,B47,B48,B54,B55,B56,B57,B65,B67,B68,B70,B71,B72,B76,B77,B84,B85,B86,B91,B94,B96,C1,C15,C23,C26,C28,C29,C33,C35,C37,C38,C40,C41,C46,C47,C5,C6,C62,C68,C71,C73,C74,C78,C79,C83,C85,C9,D1
`Chr1:71827933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B135,B90,B92,C17
`Chr1:71828042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,B138,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788899.1

643 aa

322

643

ATE_N

ATE_C

PF04376 ATE_N 35-105 aa PF04377 ATE_C 352-494 aa

XP_057788900.1

562 aa

281

562

ATE_C

PF04377 ATE_C 271-413 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788899.1`	Pfam	`PF04376`	ATE_N	Family	35	105	4.8e-24	85.1	Arginine-tRNA-protein transferase, N terminus
`XP_057788899.1`	Pfam	`PF04377`	ATE_C	Family	352	494	4.3e-45	154.0	Arginine-tRNA-protein transferase, C terminus
`XP_057788900.1`	Pfam	`PF04377`	ATE_C	Family	271	413	3.8e-45	154.1	Arginine-tRNA-protein transferase, C terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932916.1
AAAAAATGGGAAAAATAAATTTCAAGAACATAAACACAACAAATTTTAGACTAATTTAAAGGGATTCCAAGTCATCTACTTCACAAAACTGCGATCACTGGCCAATTGGATTCATAGGTTTCTCAATCAAAGAAAAAAGGGGGGAAATAAATAGCAGCGAAACTGCCTTCAATTAATTCCACTGCCAAATCAGAATTTGCAGCAGTCGAAATCAGTGATGGCGGAGGTCAAGAAGATGCGAAGCGAAGCGAGCACCAGCG...

XM_057932917.1
ACCAGTGTTTCTCATGGGCTTTGGGCGCATAGTTTGACGGTTGACGACTATCAAGGCTGAGTTTTCTCAAAGTTTTCTTCGCTCTAGCTCTCCTTGACAGAGGCTGGAGACGATCTGGCTGTTTCCTGTACAAACCTGACATGGAGAAAACATGCTGCCCCTCATATACTATTCGTCTCAAAGCTGGTGACTTTGTTCCTTCAAAAGAACAAGTTCGAGTGTCTAAAAAGATGCAAAGGTTTTTAAATCACACATTAGAT...

CDS

2 records

下载 CDS FASTA

LOC131005823
ATGGCGGAGGTCAAGAAGATGCGAAGCGAAGCGAGCACCAGCGGCGGCGGCGGGGGTGGTGAAAGAGGCGAAAGCGTGGTGGGCGATGTTGGTCGCCGGAAAAGCACTTGTGGCTACTGCAAATCTGGCGCGTACACCAGTGTTTCTCATGGGCTTTGGGCGCATAGTTTGACGGTTGACGACTATCAAGCTCTCCTTGACAGAGGCTGGAGACGATCTGGCTGTTTCCTGTACAAACCTGACATGGAGAAAACATGCTG...

LOC131005823
ATGGAGAAAACATGCTGCCCCTCATATACTATTCGTCTCAAAGCTGGTGACTTTGTTCCTTCAAAAGAACAAGTTCGAGTGTCTAAAAAGATGCAAAGGTTTTTAAATCACACATTAGATGTGACCACAAGGTCCACAACAGACAAGCCAACTGATGAGCTGAAGACTTCTGTGGCGTCATGCAGCTCTGAACATAATAGTGAAAAAAACTCTACTACAATTGACTCCTCCAAAGGTGATGGCAAAGATAGGGATAAAAC...

Protein

2 records

下载 Protein FASTA

XP_057788899.1
MAEVKKMRSEASTSGGGGGGERGESVVGDVGRRKSTCGYCKSGAYTSVSHGLWAHSLTVDDYQALLDRGWRRSGCFLYKPDMEKTCCPSYTIRLKAGDFVPSKEQVRVSKKMQRFLNHTLDVTTRSTTDKPTDELKTSVASCSSEHNSEKNSTTIDSSKGDGKDRDKTGQYVHLLSDQVDKTVDLCVKCGELPANIQLPKASVKKVTPAKRKLQAENSEELMFSCNVAFQIIATIRRVKKDAEHVKSVEHGFGGDKDFPD...

XP_057788900.1
MEKTCCPSYTIRLKAGDFVPSKEQVRVSKKMQRFLNHTLDVTTRSTTDKPTDELKTSVASCSSEHNSEKNSTTIDSSKGDGKDRDKTGQYVHLLSDQVDKTVDLCVKCGELPANIQLPKASVKKVTPAKRKLQAENSEELMFSCNVAFQIIATIRRVKKDAEHVKSVEHGFGGDKDFPDLSPQKTAEILASHLNQLAESHGLSVRACNGHINFYSAMNQVDLVEVGRSTVSKTSLPATGANDRIVKKNSGGCGGQKRRIE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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