当前解析结果
SmilChr01G005494| 统一新 Gene ID | SmilChr01G005494 |
|---|---|
| 名称 | SmilChr01G005494 |
| 描述 | syntaxin-31 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 71853840 - 71857437 / - |
| NCBI Gene ID | LOC131005828 |
|---|---|
| GeneID | 131005828 |
| locus_tag | - |
| NCBI Name | LOC131005828 |
| 原始查询 | SmilChr01G005494 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | syntaxin-31 |
| 产物 | syntaxin-31 |
| Arabidopsis | AT5G05760 (SYP31)syntaxin of plants 31 [Source:NCBI gene (formerly Entrezgene);Acc:830461] identity=59.6; qcov=0.994; evalue=4.47e-124; confidence=high |
| Rice | Os01g0179200- identity=51.2; qcov=0.888; evalue=2.99e-93; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006906 (vesicle fusion); GO:0012505 (endomembrane system); GO:0031201 (SNARE complex); GO:0048278 (GO:0048278) |
| KEGG | smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05739 (SNARE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005828 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057788908.1 |
| 2 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057788908.1 |
| 3 | Endosome | 内体 | 0.20000 | XP_057788908.1 |
| 4 | Endosome membrane | 内体膜 | 0.20000 | XP_057788908.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057788908.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:71854982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr1:71857025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C37 |
Chr1:71857037 |
G |
A |
EMS_canonical_SNV | stop_gained | 126 | A1,A13,A16,A18,A2,A6,A7,A8,A9,B100,B102,B103,B104,B105,B107,B108,B109,B11,B111,B112,B114,B115,B117,B119,B12,B121,B122,B123,B127,B128,B129,B131,B132,B133,B136,B137,B138,B16,B18,B20,B21,B25,B29,B30,B31,B35,B36,B37,B4,B41,B45,B49,B50,B54,B55,B56,B59,B6,B62,B63,B73,B74,B76,B77,B79,B81,B83,B85,B87,B88,B89,B9,B90,B92,B94,B96,B99,C1,C11,C13,C18,C22,C26,C27,C28,C3,C30,C31,C33,C34,C35,C37,C40,C41,C44,C47,C5,C50,C51,C53,C54,C60,C61,C62,C64,C65,C66,C67,C69,C7,C74,C75,C76,C78,C80,C81,C82,C83,C84,C85,C86,C9,D11,D2,D5,D8 |
Chr1:71857038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B104,B115,B61,C42 |
Chr1:71857058 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C37 |
Chr1:71857073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C37 |
Chr1:71857093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C37 |
Chr1:71857109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C27 |
Chr1:71857119 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B43,B87,C41 |
Chr1:71857137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B27,B50,B57 |
Chr1:71857138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C56 |
Chr1:71857142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B63,C46,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788908.1PF05739
SNARE 249-326 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788908.1 |
Pfam | PF05739 |
SNARE | Domain | 249 | 326 | 4.8e-22 | 78.3 | SNARE domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。