Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005495`

染色体: Chr01 坐标: 71858886-71862240 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005495`
名称	SmilChr01G005495
描述	60S acidic ribosomal protein P0-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71858886 - 71862240 / `+`

ID 对照

NCBI Gene ID	`LOC131005830`
GeneID	`131005830`
locus_tag	`-`
NCBI Name	`LOC131005830`
原始查询	`SmilChr01G005495`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	60S acidic ribosomal protein P0-like
产物	60S acidic ribosomal protein P0-like
Arabidopsis	`AT2G40010` (AT2G40010) Ribosomal protein L10 family protein [Source:NCBI gene (formerly Entrezgene);Acc:818589] identity=82; qcov=0.907; evalue=6.39e-176; confidence=high
Rice	`Os08g0130500` (YK704) 60S acidic ribosomal protein P0-like [Source:NCBI gene (formerly Entrezgene);Acc:4344590] identity=75.3; qcov=1; evalue=6.42e-164; confidence=high
GO	GO:0000027 (ribosomal large subunit assembly); GO:0002181 (cytoplasmic translation); GO:0003735 (structural constituent of ribosome); GO:0022625 (cytosolic large ribosomal subunit); GO:0042254 (ribosome biogenesis); GO:0070180 (large ribosomal subunit rRNA binding)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00428 (Ribosomal_60s); PF00466 (Ribosomal_L10); PF17777 (RL10P_insert)
InterPro	-
eggNOG	-
NR	GeneID:131005830

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788909.1`
2	Cytosol	细胞质基质	1.00000	`XP_057788909.1`
3	Nucleus	细胞核	0.00000	`XP_057788909.1`
4	Chromosome	染色体	0.00000	`XP_057788909.1`
5	Centromere	着丝粒	0.00000	`XP_057788909.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71859017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B138,C17,C35
`Chr1:71860076`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C33
`Chr1:71860076`	`TC`	`T`	1bp_deletion	CDS_variant	1	C33
`Chr1:71860912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:71860957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B135,B90,B92
`Chr1:71861549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B139,B22,C19,D6
`Chr1:71861564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr1:71861581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C17,C61,D11
`Chr1:71861918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B27,B68,C27
`Chr1:71861924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr1:71861955`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr1:71862019`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788909.1

324 aa

162

324

Ribosomal_L10

RL10P_insert

Ribosomal_60s

PF00466 Ribosomal_L10 8-108 aa PF17777 RL10P_insert 114-183 aa PF00428 Ribosomal_60s 234-323 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788909.1`	Pfam	`PF00466`	Ribosomal_L10	Family	8	108	6e-17	62.3	Ribosomal protein L10
`XP_057788909.1`	Pfam	`PF17777`	RL10P_insert	Domain	114	183	8.9e-22	77.5	Insertion domain in 60S ribosomal protein L10P
`XP_057788909.1`	Pfam	`PF00428`	Ribosomal_60s	Family	234	323	7.1e-18	65.7	60s Acidic ribosomal protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057932926.1
ATTTACCGTACTTCATTTGACCTATATAACGCCTCTGAGGTAAATTATAGGGTTTTTCACTTTTACCTCTCCTCCTCCGCGCAACCACCGTCGACAAGTTGAACTCACGGCAGCTCGCGATGGCTCCGAAACTATCCAAGGCTGACAAAAAGGTCAACTACGACAAGAAAATGTGCAGTTTGTTGGACGAGTACGCGCAGGTGCTGGTGGTGGCCGCCGATAACGTCGGATCGAAGCAGCTCCAGAACATTCGGAAGGGT...

CDS

1 records

下载 CDS FASTA

LOC131005830
ATGGCTCCGAAACTATCCAAGGCTGACAAAAAGGTCAACTACGACAAGAAAATGTGCAGTTTGTTGGACGAGTACGCGCAGGTGCTGGTGGTGGCCGCCGATAACGTCGGATCGAAGCAGCTCCAGAACATTCGGAAGGGTCTGCGAGGCGATTCCGTCGTTCTGATGGGTAAGAACACCATGATGAAGCGAACCGTCAGAATTCACTCCGAGAATACCGGCAACACCGCGATTCTCAGCCTCGTGCCTCTGCTTGTTGG...

Protein

1 records

下载 Protein FASTA

XP_057788909.1
MAPKLSKADKKVNYDKKMCSLLDEYAQVLVVAADNVGSKQLQNIRKGLRGDSVVLMGKNTMMKRTVRIHSENTGNTAILSLVPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIHKGEKVGSSEAALLSKLGIRPFSYGLVVLSVYDNGSVFSPDVLNLTEDDLAERFAQGVSIVTSLSLAIAYPTIAAAPHMFVNAYKNALAVAVETDY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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