Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005499`

染色体: Chr01 坐标: 71883359-71887955 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005499`
名称	SmilChr01G005499
描述	26S proteasome non-ATPase regulatory subunit 7 homolog A
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71883359 - 71887955 / `+`

ID 对照

NCBI Gene ID	`LOC131005833`
GeneID	`131005833`
locus_tag	`-`
NCBI Name	`LOC131005833`
原始查询	`SmilChr01G005499`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome non-ATPase regulatory subunit 7 homolog A
产物	26S proteasome non-ATPase regulatory subunit 7 homolog A
Arabidopsis	`AT5G05780` (RPN8A) RP non-ATPase subunit 8A [Source:NCBI gene (formerly Entrezgene);Acc:830463] identity=90.3; qcov=0.994; evalue=0; confidence=high
Rice	`Os04g0661900` (OsRpn8) - identity=86.3; qcov=0.519; evalue=3.4e-104; confidence=medium
GO	GO:0000502 (proteasome complex); GO:0005515 (protein binding); GO:0005838 (proteasome regulatory particle); GO:0008237 (metallopeptidase activity); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01398 (JAB); PF13012 (MitMem_reg)
InterPro	-
eggNOG	-
NR	GeneID:131005833

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057788913.1`
2	Nucleus	细胞核	1.00000	`XP_057788914.1`
3	Chromosome	染色体	0.00000	`XP_057788913.1`
4	Centromere	着丝粒	0.00000	`XP_057788913.1`
5	Chromatin	染色质	0.00000	`XP_057788913.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71883813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr1:71883870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B2,B82,C55
`Chr1:71883911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B131,B40,C62
`Chr1:71886343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr1:71886549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:71886795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr1:71886970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr1:71886978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C62
`Chr1:71887219`	`GC`	`G`	1bp_deletion	frameshift_variant	7	A4,B108,B2,B23,B71,C23,C62
`Chr1:71887223`	`AT`	`A`	1bp_deletion	frameshift_variant	7	A4,B108,B2,B23,B71,C23,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788913.1

361 aa

180

361

JAB

MitMem_reg

PF01398 JAB 15-124 aa PF13012 MitMem_reg 174-285 aa

XP_057788914.1

310 aa

155

310

JAB

MitMem_reg

PF01398 JAB 15-124 aa PF13012 MitMem_reg 174-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788913.1`	Pfam	`PF01398`	JAB	Domain	15	124	9e-35	119.7	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
`XP_057788913.1`	Pfam	`PF13012`	MitMem_reg	Family	174	285	2.1e-40	137.9	Maintenance of mitochondrial structure and function
`XP_057788914.1`	Pfam	`PF01398`	JAB	Domain	15	124	6e-35	120.3	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
`XP_057788914.1`	Pfam	`PF13012`	MitMem_reg	Family	174	285	2.2e-40	137.8	Maintenance of mitochondrial structure and function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932931.1
TTTAATTTTTTTTTGCATCTATATTCGTAAATATTTTAAATGTGAGCATTTTCTTTTTGTATATTTGAAAGGTTATAAAGTATTATTAACCTTTAACTAATGTTTAGGGTTGTAAAAAACAAAAACAAAAATGAAGGTATAAATTCCCATGTGATATATAGTTACATACTGCTTCACCAGGTGAGCCCATTACGGATTAAGGCCCACTATCTACCAGGCCCATCTCGAGAAATATTTAACACACACCCATTTAAAAATAG...

XM_057932930.1
TTATTTATTGGGAATAAATAGAAAGAGAAATTGAGGAAGACCGAATTCCCCTTTCGTCCCAAAGCAAAACCCCAGCTCAAGCAACCGCGAGGTAGAAATTGGAGCGAAATGGACGTGATAAAATCACAGCAGATTTCGGCGCGGCCGATCGACAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGATCACTACAATCGGGTGGCGCGTGACACCAGGAAGCGCGTCGTCGGTGTTCTACTCGGGAGCTCGTA...

CDS

2 records

下载 CDS FASTA

LOC131005833
ATGGACGTGATAAAATCACAGCAGATTTCGGCGCGGCCGATCGACAAGGTGGTGGTGCACCCGCTGGTGCTGCTCAGCATCGTCGATCACTACAATCGGGTGGCGCGTGACACCAGGAAGCGCGTCGTCGGTGTTCTACTCGGGAGCTCGTATAAGGGCACCGTTGACGTCACCAACAGCTACGCCGTTCCTTTTGAAGAAGATGACAGGGACCCTAGCATTTGGTTTCTTGATCATAATTACCATGAATCAATGTTTTC...

Protein

2 records

下载 Protein FASTA

XP_057788913.1
MDVIKSQQISARPIDKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGSSYKGTVDVTNSYAVPFEEDDRDPSIWFLDHNYHESMFSMFRRINAKEHVVGWYSTGPKLKENDLNIHGLFNDYVPTPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLAALKGLDARLKEIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVSELVKAFAVK...

XP_057788914.1
MDVIKSQQISARPIDKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGSSYKGTVDVTNSYAVPFEEDDRDPSIWFLDHNYHESMFSMFRRINAKEHVVGWYSTGPKLKENDLNIHGLFNDYVPTPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLAALKGLDARLKEIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVSELVKAFAVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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