Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005510`

染色体: Chr01 坐标: 71950708-71954175 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005510`
名称	SmilChr01G005510
描述	coronatine-insensitive protein 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	71950708 - 71954175 / `+`

ID 对照

NCBI Gene ID	`LOC131005846`
GeneID	`131005846`
locus_tag	`-`
NCBI Name	`LOC131005846`
原始查询	`SmilChr01G005510`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coronatine-insensitive protein 1-like
产物	coronatine-insensitive protein 1-like
Arabidopsis	`AT2G39940` (COI1) RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818581] identity=64.7; qcov=0.969; evalue=0; confidence=high
Rice	`Os05g0449500` (OsCOI1b) - identity=58.2; qcov=0.982; evalue=0; confidence=high
GO	GO:0019005 (SCF ubiquitin ligase complex); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF18511 (F-box_5); PF18791 (Transp_inhibit)
InterPro	-
eggNOG	-
NR	GeneID:131005846

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057788930.1`
2	Cytosol	细胞质基质	0.20000	`XP_057788930.1`
3	Chloroplast	叶绿体	0.20000	`XP_057788930.1`
4	Chromosome	染色体	0.00000	`XP_057788930.1`
5	Centromere	着丝粒	0.00000	`XP_057788930.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:71950939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr1:71950973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr1:71951101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B70,B81,C74
`Chr1:71951180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr1:71951284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr1:71951944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,C33
`Chr1:71952048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B72,B98,C51,C65
`Chr1:71952074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr1:71952178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr1:71953057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B70,B81,C33,C74
`Chr1:71953262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,B82,C27
`Chr1:71953345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,C2,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788930.1

611 aa

306

611

F-box_5

Transp_inhibit

PF18511 F-box_5 22-56 aa PF18791 Transp_inhibit 75-121 aa

XP_057788931.1

611 aa

306

611

F-box_5

Transp_inhibit

PF18511 F-box_5 22-56 aa PF18791 Transp_inhibit 75-121 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788930.1`	Pfam	`PF18511`	F-box_5	Domain	22	56	7.1e-17	61.4	F-box
`XP_057788930.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	75	121	5.9e-21	74.5	Transport inhibitor response 1 protein domain
`XP_057788931.1`	Pfam	`PF18511`	F-box_5	Domain	22	56	7.1e-17	61.4	F-box
`XP_057788931.1`	Pfam	`PF18791`	Transp_inhibit	Repeat	75	121	5.9e-21	74.5	Transport inhibitor response 1 protein domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932948.1
TAATAATAATAATAAAAGAAGTGATATTTAGGTGTTGATTGGTATTGGTCACAATAAGCATCTCTTTCGGCGCTTTTCCCTTCATCCCACCTGTCGTACAATTTCTCTCTCCCAAACCCCCAAACCTCTCAAAATGACCAATTCGACGACTCAACGACGAATCCCTAGCTTCGGCGGCGGCGGCGGCGGCGGCCCTGACGACACCGTGTGGGAGTGCGTCATCCCCTACGCGCGTGACCGCGGCGCGGTGTCGCTGGTGT...

XM_057932947.1
GTATTGGTCACAATAAGCATCTCTTTCGGCGCTTTTCCCTTCATCCCACCTGTCGTACAATTTCTCTCTCCCAAACCCCCAAACCTCTCAAAATGACCAATTCGACGACTCAACGACGAATCCCTAGCTTCGGCGGCGGCGGCGGCGGCGGCCCTGACGACACCGTGTGGGAGTGCGTCATCCCCTACGCGCGTGACCGCGGCGCGGTGTCGCTGGTGTGCAAGCGCTGGTACGAGATCGACGCCATCACCCGCAAGCAC...

CDS

2 records

下载 CDS FASTA

LOC131005846
ATGACCAATTCGACGACTCAACGACGAATCCCTAGCTTCGGCGGCGGCGGCGGCGGCGGCCCTGACGACACCGTGTGGGAGTGCGTCATCCCCTACGCGCGTGACCGCGGCGCGGTGTCGCTGGTGTGCAAGCGCTGGTACGAGATCGACGCCATCACCCGCAAGCACGTCACCATGGCGCTCTGCTACACCGCCACCCCGCAGCAGCTCTCGCGCCGCTTCCCCCAGCTGGAGTCGCTCAAGATCAAGGGCAAGCCGCG...

Protein

2 records

下载 Protein FASTA

XP_057788930.1
MTNSTTQRRIPSFGGGGGGGPDDTVWECVIPYARDRGAVSLVCKRWYEIDAITRKHVTMALCYTATPQQLSRRFPQLESLKIKGKPRAAMFNLIGEDWGGYAAPWVQEVTRSFARMKALHFRRMIVSDSDLQLLAASAAGGVLEVLKLDRCSGFSTDGLRHIGRACRNLRTLYIEESIIAEHDGEWLHQLASNNTVLENLNFFMTDLKSVRSEDIELLARRCPSLTSVKISDCDISKLVEFFRNAGSLEEFAGGSVTEPL...

XP_057788931.1
MTNSTTQRRIPSFGGGGGGGPDDTVWECVIPYARDRGAVSLVCKRWYEIDAITRKHVTMALCYTATPQQLSRRFPQLESLKIKGKPRAAMFNLIGEDWGGYAAPWVQEVTRSFARMKALHFRRMIVSDSDLQLLAASAAGGVLEVLKLDRCSGFSTDGLRHIGRACRNLRTLYIEESIIAEHDGEWLHQLASNNTVLENLNFFMTDLKSVRSEDIELLARRCPSLTSVKISDCDISKLVEFFRNAGSLEEFAGGSVTEPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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