当前解析结果
SmilChr01G005552| 统一新 Gene ID | SmilChr01G005552 |
|---|---|
| 名称 | SmilChr01G005552 |
| 描述 | uncharacterized SmilChr01G005552 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72353738 - 72354907 / + |
| NCBI Gene ID | LOC131012661 |
|---|---|
| GeneID | 131012661 |
| locus_tag | - |
| NCBI Name | LOC131012661 |
| 原始查询 | SmilChr01G005552 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332]; symbol=AT3G51690; hit=AT3G51690; species=arabidopsis; confidence=medium |
| 产物 | PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332]; symbol=AT3G51690; hit=AT3G51690; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G51690 (AT3G51690)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332] identity=40.5; qcov=0.784; evalue=2.34e-70; confidence=medium |
| Rice | Os04g0357300- identity=39; qcov=0.705; evalue=8.87e-48; confidence=medium |
| GO | GO:0000723 (telomere maintenance); GO:0003678 (DNA helicase activity); GO:0006281 (DNA repair) |
| KEGG | - |
| Pfam | PF05970 (PIF1); PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012661 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796635.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057796635.1 |
| 3 | Telomere | 端粒 | 0.40000 | XP_057796635.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796635.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796635.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72353753 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B103 |
Chr1:72353753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr1:72353762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr1:72353765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B48,B52,B67,B99 |
Chr1:72353775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr1:72353793 |
G |
GT |
1bp_insertion | frameshift_variant | 10 | A14,A19,A7,B120,B20,B33,B66,C76,C78,C8 |
Chr1:72353807 |
CTA |
C |
2bp_deletion | frameshift_variant | 4 | A11,B22,C49,D5 |
Chr1:72353807 |
CTA |
C |
2bp_deletion | CDS_variant | 4 | A11,B22,C49,D5 |
Chr1:72353809 |
AGG |
A |
2bp_deletion | frameshift_variant | 39 | A24,A5,B112,B130,B139,B14,B18,B19,B25,B26,B3,B33,B40,B49,B55,B58,B61,B64,B75,B78,B8,B83,B85,B91,B96,B97,C15,C18,C19,C31,C34,C38,C42,C47,C58,C62,C64,C9,D1 |
Chr1:72353817 |
ATT |
A |
2bp_deletion | frameshift_variant | 75 | A1,A16,A4,B101,B102,B104,B105,B106,B109,B110,B117,B122,B124,B125,B129,B13,B140,B21,B22,B25,B29,B3,B33,B36,B44,B46,B49,B59,B7,B75,B78,B8,B81,B83,B88,B90,B92,B93,B97,C10,C11,C13,C16,C21,C22,C23,C24,C33,C35,C46,C48,C51,C56,C58,C59,C6,C61,C62,C65,C68,C69,C73,C74,C77,C79,C81,C82,C83,C85,C87,C9,D10,D2,D5,D8 |
Chr1:72353840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C17 |
Chr1:72353841 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796635.1PF05970
PIF1 9-91 aa
PF21530
Pif1_2B_dom 192-238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796635.1 |
Pfam | PF05970 |
PIF1 | Family | 9 | 91 | 8.6e-31 | 108.0 | PIF1-like helicase |
XP_057796635.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 192 | 238 | 7.2e-21 | 74.4 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。