当前解析结果
SmilChr01G005560| 统一新 Gene ID | SmilChr01G005560 |
|---|---|
| 名称 | SmilChr01G005560 |
| 描述 | transcription factor MYB1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72410811 - 72413942 / - |
| NCBI Gene ID | LOC131005929 |
|---|---|
| GeneID | 131005929 |
| locus_tag | - |
| NCBI Name | LOC131005929 |
| 原始查询 | SmilChr01G005560 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB1-like |
| 产物 | transcription factor MYB1-like |
| Arabidopsis | AT3G55730 (MYB109)myb domain protein 109 [Source:NCBI gene (formerly Entrezgene);Acc:824739] identity=43.8; qcov=0.891; evalue=4.26e-76; confidence=medium |
| Rice | Os01g0850400 (R2R3-MYB)- identity=39.4; qcov=0.932; evalue=7e-70; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005929 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789033.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057789033.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057789033.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057789033.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057789033.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72411147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:72411227 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B104 |
Chr1:72411231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,B104 |
Chr1:72411263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr1:72411403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:72411425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,B83 |
Chr1:72411602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C80 |
Chr1:72411741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:72411742 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B46 |
Chr1:72411742 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B46 |
Chr1:72411793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B80 |
Chr1:72413703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789033.1PF00249
Myb_DNA-binding 34-80 aa
PF13921
Myb_DNA-bind_6 37-95 aa
PF00249
Myb_DNA-binding 86-130 aa
PF13921
Myb_DNA-bind_6 89-133 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789033.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 34 | 80 | 3.9e-36 | 123.6 | Myb-like DNA-binding domain |
XP_057789033.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 37 | 95 | 1.2e-24 | 87.0 | Myb-like DNA-binding domain |
XP_057789033.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 86 | 130 | 3.9e-36 | 123.6 | Myb-like DNA-binding domain |
XP_057789033.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 89 | 133 | 1.2e-24 | 87.0 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。