当前解析结果
SmilChr01G005566| 统一新 Gene ID | SmilChr01G005566 |
|---|---|
| 名称 | SmilChr01G005566 |
| 描述 | uncharacterized SmilChr01G005566 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72451656 - 72457191 / - |
| NCBI Gene ID | LOC131012670 |
|---|---|
| GeneID | 131012670 |
| locus_tag | - |
| NCBI Name | LOC131012670 |
| 原始查询 | SmilChr01G005566 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=36.4; qcov=0.073; evalue=1.2e-18; confidence=weak |
| Rice | Os04g0191000- identity=29.1; qcov=0.487; evalue=7.7e-90; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012670 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796644.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057796644.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057796644.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057796644.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796644.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72451754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B49,B92,C35,D4 |
Chr1:72451765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B96 |
Chr1:72451794 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,C46,C71,D3 |
Chr1:72451802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C35,D4 |
Chr1:72451807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C24,C3,C35,D4 |
Chr1:72451919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A7,B17,B82,C3 |
Chr1:72452167 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:72452233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:72452291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr1:72452349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr1:72452367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C47,C50,C81,D10,D2 |
Chr1:72452388 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | B126,B131,B60,B70,B71,C10,C9,D1,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796644.1PF13650
Asp_protease_2 632-726 aa
PF00078
RVT_1 991-1146 aa
PF17919
RT_RNaseH_2 1210-1308 aa
PF17917
RT_RNaseH 1238-1338 aa
PF17921
Integrase_H2C2 1438-1495 aa
PF00665
rve 1516-1609 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796644.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 632 | 726 | 2.9e-06 | 28.6 | Aspartyl protease |
XP_057796644.1 |
Pfam | PF00078 |
RVT_1 | Domain | 991 | 1146 | 1.7e-29 | 103.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057796644.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1210 | 1308 | 1.1e-31 | 109.5 | RNase H-like domain found in reverse transcriptase |
XP_057796644.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1238 | 1338 | 3.7e-36 | 124.2 | RNase H-like domain found in reverse transcriptase |
XP_057796644.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1438 | 1495 | 4.8e-12 | 46.6 | Integrase zinc binding domain |
XP_057796644.1 |
Pfam | PF00665 |
rve | Domain | 1516 | 1609 | 7e-17 | 62.3 | Integrase core domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。