当前解析结果
SmilChr01G005572| 统一新 Gene ID | SmilChr01G005572 |
|---|---|
| 名称 | SmilChr01G005572 |
| 描述 | vestitone reductase-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72481617 - 72483066 / + |
| NCBI Gene ID | LOC131005942 |
|---|---|
| GeneID | 131005942 |
| locus_tag | - |
| NCBI Name | LOC131005942 |
| 原始查询 | SmilChr01G005572 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vestitone reductase-like |
| 产物 | vestitone reductase-like |
| Arabidopsis | AT2G45400 (BEN1)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819146] identity=47.4; qcov=0.989; evalue=6.8e-98; confidence=high |
| Rice | Os08g0515900- identity=38.5; qcov=0.836; evalue=5.9e-60; confidence=medium |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF05368 (NmrA); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005942 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789049.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057789049.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789049.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789049.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789049.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72482092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,C40,C50 |
Chr1:72482403 |
T |
TA |
1bp_insertion | stop_gained,frameshift_variant | 26 | A11,B1,B101,B125,B23,B24,B25,B3,B46,B52,B55,B73,B75,B77,B91,C1,C23,C4,C44,C47,C50,C7,C71,C76,C82,C83 |
Chr1:72482512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B55,C23 |
Chr1:72482584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:72482608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr1:72482623 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | A11 |
Chr1:72482623 |
T |
TG |
1bp_insertion | CDS_variant | 1 | A11 |
Chr1:72482630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:72482669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,C15 |
Chr1:72482764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr1:72482844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,C64,C66 |
Chr1:72482854 |
AG |
A |
1bp_deletion | frameshift_variant | 9 | A11,B2,B52,B62,B69,B73,C35,C50,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789049.1PF05368
NmrA 5-132 aa
PF01370
Epimerase 8-249 aa
PF07993
NAD_binding_4 10-197 aa
PF01073
3Beta_HSD 10-241 aa
PF13460
NAD_binding_10 12-145 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789049.1 |
Pfam | PF05368 |
NmrA | Family | 5 | 132 | 4.5e-08 | 33.8 | NmrA-like family |
XP_057789049.1 |
Pfam | PF01370 |
Epimerase | Family | 8 | 249 | 3.3e-19 | 70.0 | NAD dependent epimerase/dehydratase family |
XP_057789049.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 10 | 197 | 1.2e-08 | 35.2 | Male sterility protein |
XP_057789049.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 10 | 241 | 3.1e-12 | 46.8 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057789049.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 12 | 145 | 3.1e-08 | 34.4 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。