当前解析结果
SmilChr01G005577| 统一新 Gene ID | SmilChr01G005577 |
|---|---|
| 名称 | SmilChr01G005577 |
| 描述 | uncharacterized SmilChr01G005577 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72503903 - 72505447 / + |
| NCBI Gene ID | LOC131005952 |
|---|---|
| GeneID | 131005952 |
| locus_tag | - |
| NCBI Name | LOC131005952 |
| 原始查询 | SmilChr01G005577 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Oshsp17.9A; symbol=Oshsp17.9A; hit=Os03g0266300; species=rice; confidence=low |
| 产物 | Oshsp17.9A; symbol=Oshsp17.9A; hit=Os03g0266300; species=rice; confidence=low |
| Arabidopsis | AT1G53540 (AT1G53540)HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789] identity=62.7; qcov=0.331; evalue=3.25e-38; confidence=low |
| Rice | Os03g0266300 (Oshsp17.9A)- identity=58.7; qcov=0.364; evalue=6.05e-39; confidence=low |
| GO | GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization) |
| KEGG | - |
| Pfam | PF00011 (HSP20); PF01107 (MP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005952 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057789060.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057789060.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789060.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789060.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789060.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72504211 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:72504251 |
T |
TAA |
2bp_insertion | stop_gained,frameshift_variant | 20 | A14,A15,A24,B106,B112,B12,B137,B24,B46,B86,B88,B9,B91,C10,C18,C51,C53,C66,C85,C87 |
Chr1:72504261 |
G |
GC |
1bp_insertion | frameshift_variant | 21 | A10,A14,A15,A24,B106,B112,B12,B137,B24,B46,B86,B88,B9,B91,C10,C18,C51,C53,C66,C85,C87 |
Chr1:72504274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B50 |
Chr1:72504286 |
T |
TA |
1bp_insertion | frameshift_variant | 10 | A10,B137,B81,B86,B9,B91,C18,C53,C66,C85 |
Chr1:72504331 |
G |
GC |
1bp_insertion | frameshift_variant | 18 | A10,A15,A22,B103,B107,B12,B137,B24,B46,B86,B88,B9,B91,C10,C18,C47,C85,D1 |
Chr1:72504335 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | C66 |
Chr1:72504335 |
G |
GC |
1bp_insertion | CDS_variant | 1 | C66 |
Chr1:72504337 |
AAT |
A |
2bp_deletion | frameshift_variant | 8 | A24,B6,B90,C51,C54,C63,C71,C85 |
Chr1:72504344 |
ACG |
A |
2bp_deletion | frameshift_variant | 28 | A10,A15,A22,B102,B103,B107,B112,B12,B120,B137,B18,B24,B46,B81,B86,B88,B9,B91,C10,C18,C27,C4,C47,C51,C53,C66,C85,D1 |
Chr1:72504347 |
T |
TAA |
2bp_insertion | stop_gained,frameshift_variant | 29 | A10,A15,A22,A24,B102,B103,B107,B112,B12,B120,B137,B18,B24,B46,B81,B86,B88,B9,B91,C10,C18,C27,C4,C47,C51,C53,C66,C85,D1 |
Chr1:72504375 |
TAG |
T |
2bp_deletion | frameshift_variant | 18 | A15,A25,B106,B12,B120,B130,B137,B24,B29,B46,B88,B9,C18,C29,C51,C6,C71,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789060.1PF01107
MP 48-154 aa
PF00011
HSP20 228-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789060.1 |
Pfam | PF01107 |
MP | Family | 48 | 154 | 2.7e-08 | 34.4 | Viral movement protein (MP) |
XP_057789060.1 |
Pfam | PF00011 |
HSP20 | Domain | 228 | 331 | 4.4e-27 | 94.9 | Hsp20/alpha crystallin family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。