Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005603`

染色体: Chr01 坐标: 72601350-72602314 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005603`
名称	SmilChr01G005603
描述	class I heat shock protein-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72601350 - 72602314 / `-`

ID 对照

NCBI Gene ID	`LOC131006024`
GeneID	`131006024`
locus_tag	`-`
NCBI Name	`LOC131006024`
原始查询	`SmilChr01G005603`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	class I heat shock protein-like
产物	class I heat shock protein-like
Arabidopsis	`AT1G07400` (AT1G07400) HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837252] identity=69.6; qcov=1.1; evalue=1.02e-68; confidence=high
Rice	`Os03g0266300` (Oshsp17.9A) - identity=65.7; qcov=1.15; evalue=2.47e-70; confidence=high
GO	GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00011 (HSP20)
InterPro	-
eggNOG	-
NR	GeneID:131006024

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789162.1`
2	Cytosol	细胞质基质	0.80000	`XP_057789162.1`
3	Nucleus	细胞核	0.00000	`XP_057789162.1`
4	Chromosome	染色体	0.00000	`XP_057789162.1`
5	Centromere	着丝粒	0.00000	`XP_057789162.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72601632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,B52,C20
`Chr1:72601641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:72601736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:72601752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:72601860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B119,C48,C56,C65
`Chr1:72601932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C5
`Chr1:72601948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B6,C33,C4
`Chr1:72601965`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B6,C33,C4
`Chr1:72601970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C33,C4
`Chr1:72601971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B6,C33,C4
`Chr1:72601977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,B52,C20
`Chr1:72601978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B16,C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789162.1

144 aa

144

HSP20

PF00011 HSP20 40-143 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789162.1`	Pfam	`PF00011`	HSP20	Domain	40	143	2.8e-32	111.5	Hsp20/alpha crystallin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933179.1
TTGATTGATAAATTCAAAATACCTAGCAAGGGGAGACAACTCAGAAAAGGGAAAGAAAGAAAAAGAAAGTCTCGAAATTTCTATAGTCTTCTACCAGAACAAATGAAAAATCCAGAAATCCACTATTTTCTGCCAAATATTGATATAAATACCCGATCAATCACAAATTCACTCCAACACACCATTTCATAGCAATTCGCTCGCATCAAATTCGTTCCAATCAATCAACAATCACTCACAAAATCTTGCTAGGTTGCAAA...

CDS

1 records

下载 CDS FASTA

LOC131006024
ATGTCGCTTATTCCCAGCTTTTTCGGCCGCCGGAGCTCCGATCCATTCTCCCTGGATCTGTGGGACCCTTTCCGCGACTCCGGCAACGAGACGTCGCAGTTCGCGGCGACGCGCGTGGACTGGAAGGAGACGGCGGAGGCGCACGTGTTCAAGGCGGACGTGCCCGGCCTGAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGAAGGGAACGTGCTGCAGATAAGCGGCGAGCGCAGCCGCGACAAGGAGGAGAAGAGCGA...

Protein

1 records

下载 Protein FASTA

XP_057789162.1
MSLIPSFFGRRSSDPFSLDLWDPFRDSGNETSQFAATRVDWKETAEAHVFKADVPGLKKEEVKVEVEEGNVLQISGERSRDKEEKSDTWHRVERSSGKFLRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEAKAIEISG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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