当前解析结果
SmilChr01G005612| 统一新 Gene ID | SmilChr01G005612 |
|---|---|
| 名称 | SmilChr01G005612 |
| 描述 | uncharacterized SmilChr01G005612 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72656181 - 72657800 / + |
| NCBI Gene ID | LOC131006028 |
|---|---|
| GeneID | 131006028 |
| locus_tag | - |
| NCBI Name | LOC131006028 |
| 原始查询 | SmilChr01G005612 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824565]; symbol=AT3G53980; hit=AT3G53980; species=arabidopsis; confidence=medium |
| 产物 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824565]; symbol=AT3G53980; hit=AT3G53980; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G53980 (AT3G53980)Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824565] identity=64.9; qcov=0.983; evalue=2.22e-49; confidence=medium |
| Rice | Os01g0849000 (OsLTPd5)- identity=57.1; qcov=1.03; evalue=2.09e-40; confidence=medium |
| GO | GO:0005504 (fatty acid binding); GO:0009627 (systemic acquired resistance) |
| KEGG | - |
| Pfam | PF00234 (Tryp_alpha_amyl); PF14368 (LTP_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006028 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057789166.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057789166.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789166.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789166.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789166.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72656322 |
TCA |
T |
2bp_deletion | frameshift_variant | 15 | A14,A16,B119,B136,B21,B25,B76,B80,B86,C25,C45,C55,C72,C74,D5 |
Chr1:72656324 |
ATG |
A |
2bp_deletion | frameshift_variant | 70 | A10,A18,A21,A23,A24,B101,B104,B105,B106,B107,B112,B120,B124,B131,B133,B139,B15,B18,B2,B22,B23,B24,B29,B31,B33,B36,B45,B47,B5,B56,B59,B68,B70,B73,B75,B79,B82,B83,B85,B87,B89,B9,B93,B95,C14,C16,C18,C19,C2,C3,C34,C36,C37,C42,C48,C49,C52,C6,C60,C61,C7,C71,C73,C79,C8,C87,D1,D11,D7,D9 |
Chr1:72656372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:72656380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr1:72656419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A7,B62,C17,C5,C83 |
Chr1:72656424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr1:72656431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,C33 |
Chr1:72656437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,C5,C83 |
Chr1:72656446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:72656485 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B62,C17 |
Chr1:72656527 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C35 |
Chr1:72656531 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789166.1PF14368
LTP_2 19-106 aa
PF00234
Tryp_alpha_amyl 38-110 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789166.1 |
Pfam | PF14368 |
LTP_2 | Family | 19 | 106 | 2.5e-09 | 37.8 | Probable lipid transfer |
XP_057789166.1 |
Pfam | PF00234 |
Tryp_alpha_amyl | Domain | 38 | 110 | 1.4e-08 | 35.6 | Protease inhibitor/seed storage/LTP family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。