当前解析结果
SmilChr01G005623| 统一新 Gene ID | SmilChr01G005623 |
|---|---|
| 名称 | SmilChr01G005623 |
| 描述 | uncharacterized SmilChr01G005623 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72716806 - 72717957 / - |
| NCBI Gene ID | LOC131012745 |
|---|---|
| GeneID | 131012745 |
| locus_tag | - |
| NCBI Name | LOC131012745 |
| 原始查询 | SmilChr01G005623 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ta11-like non-LTR retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28719410]; symbol=AT3G57587; hit=AT3G57587; species=arabidopsis; confidence=weak |
| 产物 | Ta11-like non-LTR retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28719410]; symbol=AT3G57587; hit=AT3G57587; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G57587 (AT3G57587)Ta11-like non-LTR retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:28719410] identity=23.5; qcov=0.755; evalue=2.39e-21; confidence=weak |
| Rice | Os12g0156200- identity=29.8; qcov=0.499; evalue=1.27e-19; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14111 (DUF4283); PF14392 (zf-CCHC_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796733.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057796733.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057796733.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796733.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796733.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72716826 |
C |
CGG |
2bp_insertion | frameshift_variant | 9 | A21,B11,B136,B31,B46,B52,B73,C31,C66 |
Chr1:72716827 |
G |
GGA |
2bp_insertion | frameshift_variant | 6 | A20,A21,B59,C33,C8,C84 |
Chr1:72716828 |
ACC |
A |
2bp_deletion | frameshift_variant | 14 | A20,A21,B11,B136,B31,B46,B52,B59,B73,C31,C33,C66,C8,C84 |
Chr1:72716847 |
G |
GTA |
2bp_insertion | frameshift_variant | 9 | A23,B11,B136,B31,B46,B52,B73,C31,C66 |
Chr1:72716850 |
AAG |
A |
2bp_deletion | frameshift_variant | 9 | A23,B11,B136,B31,B46,B52,B73,C31,C66 |
Chr1:72716853 |
A |
AG |
1bp_insertion | frameshift_variant | 6 | A20,A21,B59,B80,C33,C8 |
Chr1:72716872 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | C33 |
Chr1:72716872 |
C |
CT |
1bp_insertion | CDS_variant | 1 | C33 |
Chr1:72716877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr1:72716880 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C33 |
Chr1:72716880 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C33 |
Chr1:72716888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796733.1PF14111
DUF4283 32-106 aa
PF14392
zf-CCHC_4 172-217 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796733.1 |
Pfam | PF14111 |
DUF4283 | Domain | 32 | 106 | 3.3e-18 | 65.9 | Domain of unknown function (DUF4283) |
XP_057796733.1 |
Pfam | PF14392 |
zf-CCHC_4 | Domain | 172 | 217 | 1.2e-18 | 67.2 | Zinc knuckle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。