当前解析结果
SmilChr01G005633| 统一新 Gene ID | SmilChr01G005633 |
|---|---|
| 名称 | SmilChr01G005633 |
| 描述 | ultraviolet-B receptor UVR8 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72769177 - 72774637 / - |
| NCBI Gene ID | LOC131005915 |
|---|---|
| GeneID | 131005915 |
| locus_tag | - |
| NCBI Name | LOC131005915 |
| 原始查询 | SmilChr01G005633 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ultraviolet-B receptor UVR8 |
| 产物 | ultraviolet-B receptor UVR8 |
| Arabidopsis | AT3G55580 (AT3G55580)Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824723] identity=68.2; qcov=0.992; evalue=0; confidence=high |
| Rice | Os05g0456925- identity=62.2; qcov=1; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005915 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789018.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057789018.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789018.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789018.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789018.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72769593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:72769659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr1:72771391 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr1:72771650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B104,B75 |
Chr1:72771948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:72772072 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B103,B34 |
Chr1:72772072 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B103,B34 |
Chr1:72772194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:72772226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B27,B36 |
Chr1:72772238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:72773830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B78,C8,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789018.1PF25390
WD40_RLD 204-467 aa
PF13540
RCC1_2 218-249 aa
PF00415
RCC1 237-312 aa
PF13540
RCC1_2 299-328 aa
PF00415
RCC1 316-363 aa
PF13540
RCC1_2 353-380 aa
PF00415
RCC1 367-418 aa
PF13540
RCC1_2 405-434 aa
PF00415
RCC1 421-469 aa
XP_057789019.1PF25390
WD40_RLD 203-465 aa
PF13540
RCC1_2 218-247 aa
PF00415
RCC1 235-310 aa
PF13540
RCC1_2 297-326 aa
PF00415
RCC1 314-361 aa
PF13540
RCC1_2 351-378 aa
PF00415
RCC1 365-416 aa
PF13540
RCC1_2 403-432 aa
PF00415
RCC1 419-467 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789018.1 |
Pfam | PF25390 |
WD40_RLD | Repeat | 204 | 467 | 1.5e-67 | 229.2 | RCC1-like domain |
XP_057789018.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 218 | 249 | 5.3e-41 | 138.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF00415 |
RCC1 | Repeat | 237 | 312 | 3e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 299 | 328 | 5.3e-41 | 138.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF00415 |
RCC1 | Repeat | 316 | 363 | 3e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 353 | 380 | 5.3e-41 | 138.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF00415 |
RCC1 | Repeat | 367 | 418 | 3e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 405 | 434 | 5.3e-41 | 138.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789018.1 |
Pfam | PF00415 |
RCC1 | Repeat | 421 | 469 | 3e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF25390 |
WD40_RLD | Repeat | 203 | 465 | 3e-69 | 234.8 | RCC1-like domain |
XP_057789019.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 218 | 247 | 4e-43 | 144.9 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF00415 |
RCC1 | Repeat | 235 | 310 | 3.1e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 297 | 326 | 4e-43 | 144.9 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF00415 |
RCC1 | Repeat | 314 | 361 | 3.1e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 351 | 378 | 4e-43 | 144.9 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF00415 |
RCC1 | Repeat | 365 | 416 | 3.1e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF13540 |
RCC1_2 | Repeat | 403 | 432 | 4e-43 | 144.9 | Regulator of chromosome condensation (RCC1) repeat |
XP_057789019.1 |
Pfam | PF00415 |
RCC1 | Repeat | 419 | 467 | 3.1e-54 | 182.1 | Regulator of chromosome condensation (RCC1) repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。