Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005636`

染色体: Chr01 坐标: 72796920-72798669 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005636`
名称	SmilChr01G005636
描述	AT-hook motif nuclear-localized protein 19-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72796920 - 72798669 / `-`

ID 对照

NCBI Gene ID	`LOC131005982`
GeneID	`131005982`
locus_tag	`-`
NCBI Name	`LOC131005982`
原始查询	`SmilChr01G005636`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT-hook motif nuclear-localized protein 19-like
产物	AT-hook motif nuclear-localized protein 19-like
Arabidopsis	`AT4G14465` (AHL20) AT-hook motif nuclear-localized protein 20 [Source:NCBI gene (formerly Entrezgene);Acc:827093] identity=51.6; qcov=0.854; evalue=5.29e-58; confidence=high
Rice	`Os04g0590200` - identity=68.9; qcov=0.567; evalue=3.31e-55; confidence=medium
GO	GO:0003680 (minor groove of adenine-thymine-rich DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF03479 (PCC)
InterPro	-
eggNOG	-
NR	GeneID:131005982

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789106.1`
2	Chromosome	染色体	0.00000	`XP_057789106.1`
3	Centromere	着丝粒	0.00000	`XP_057789106.1`
4	Chromatin	染色质	0.00000	`XP_057789106.1`
5	Telomere	端粒	0.00000	`XP_057789106.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72797040`	`AG`	`A`	1bp_deletion	frameshift_variant	5	B127,B46,B64,C14,D9
`Chr1:72797040`	`AG`	`A`	1bp_deletion	CDS_variant	5	B127,B46,B64,C14,D9
`Chr1:72797058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B46,D9
`Chr1:72797114`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:72797163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B6,C53,D10,D8
`Chr1:72797166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C71
`Chr1:72797169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,C17,C71,D11
`Chr1:72797179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr1:72797181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B80,C38,C52
`Chr1:72797182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B80,C38,C52
`Chr1:72797194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B126,B71
`Chr1:72797225`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789106.1

261 aa

130

261

PCC

PF03479 PCC 88-204 aa

XP_057789107.1

261 aa

130

261

PCC

PF03479 PCC 88-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789106.1`	Pfam	`PF03479`	PCC	Domain	88	204	3.9e-26	92.2	Plants and Prokaryotes Conserved (PCC) domain
`XP_057789107.1`	Pfam	`PF03479`	PCC	Domain	88	204	3.9e-26	92.2	Plants and Prokaryotes Conserved (PCC) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933124.1
ACTAATTTTCCCTATTTAATATGCTTTGTTTATTGCTTGTGTTTGAACATCCACTTTGACCTTCCATATCCATTCCTCGCCTTCCAAGAAAACAATAAAATATACAGAACCAGAGAGTGGGAGAAAATCAGAAAAACCTCTCAAATTTGACACAACTCAGAAAAAAATTGAACCCATTTTGTACAGTGCCCACCGTACAAACCTCCCTGCAAAGGATCTGACTCAAACCCTAGCTTCGTACAAACTCAATCTACTTCAAG...

XM_057933123.1
CTAATTTTCCCTATTTAATATGCTTTGTTTATTGCTTGTGTTTGAACATCCACTTTGACCTTCCATATCCATTCCTCGCCTTCCAAGAAAACAATAAAATATACAGAACCAGAGAGTGGGAGAAAATCAGAAAAACCTCTCAAATTTGACACAACTCAGAAAAAAATTGAACCCATTTTGTACAGTGCCCACCGTACAAACCTCCCTGCAAAGGATCTGACTCAAACCCTAGCTTCGTACAAACTCAATCTACTTCAAGA...

CDS

2 records

下载 CDS FASTA

LOC131005982
ATGGGCAGTAGATGGTGGACAGATATGGCTCCGATGCAGCAATCGTCTCTCCATCTCATAAACTCCGCCGGAGATGAGAATGCCGGCGATCACAACCCCACCGGCGACGAGGAAGACCACCAGGAAACCGACGAGGATCGCCGCAACCTCGACCCGGAGGCGGGGGAGCCGTCGTCGAGCTCGGGGCGCCAGCGCCGCCCCCGGGGGCGGCCCCCGGGATCGAGGAACCGGCCGAAGCCGCCCGTGGTGATCACCAAGGA...

Protein

2 records

下载 Protein FASTA

XP_057789106.1
MGSRWWTDMAPMQQSSLHLINSAGDENAGDHNPTGDEEDHQETDEDRRNLDPEAGEPSSSSGRQRRPRGRPPGSRNRPKPPVVITKESPNALRSHVLEIATGGDVYECLAGFVRRRRCGVSVLSGSGAVADVTLRHPAAPDGVISLPGRFEILSLSGTFLPEPAPPGATRLTVFLDGGQGQVLGGVVVGALMASVPVTVIAVLFSNAVYERLPVEDEDGGGEGMPPPLPQNHDGASDQTKQNVPLYNDVVWAPQACPPPP...

XP_057789107.1
MGSRWWTDMAPMQQSSLHLINSAGDENAGDHNPTGDEEDHQETDEDRRNLDPEAGEPSSSSGRQRRPRGRPPGSRNRPKPPVVITKESPNALRSHVLEIATGGDVYECLAGFVRRRRCGVSVLSGSGAVADVTLRHPAAPDGVISLPGRFEILSLSGTFLPEPAPPGATRLTVFLDGGQGQVLGGVVVGALMASVPVTVIAVLFSNAVYERLPVEDEDGGGEGMPPPLPQNHDGASDQTKQNVPLYNDVVWAPQACPPPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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