Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005641`

染色体: Chr01 坐标: 72840105-72846648 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005641`
名称	SmilChr01G005641
描述	probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72840105 - 72846648 / `-`

ID 对照

NCBI Gene ID	`LOC131005860`
GeneID	`131005860`
locus_tag	`-`
NCBI Name	`LOC131005860`
原始查询	`SmilChr01G005641`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
产物	probable phosphoribosylformylglycinamidine synthase%2C chloroplastic/mitochondrial
Arabidopsis	`AT1G74260` (PUR4) purine biosynthesis 4 [Source:NCBI gene (formerly Entrezgene);Acc:843766] identity=76.7; qcov=0.997; evalue=0; confidence=high
Rice	`Os05g0104650` - identity=76.9; qcov=0.957; evalue=0; confidence=high
GO	GO:0004642 (phosphoribosylformylglycinamidine synthase activity); GO:0006189 ('de novo' IMP biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02769 (AIRS_C); PF13507 (GATase_5); PF18072 (FGAR-AT_linker); PF18076 (FGAR-AT_N); PF22689 (FGAR-AT_PurM_N-like)
InterPro	-
eggNOG	-
NR	GeneID:131005860

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057788944.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057788944.1`
3	Nucleus	细胞核	0.00000	`XP_057788944.1`
4	Chromosome	染色体	0.00000	`XP_057788944.1`
5	Centromere	着丝粒	0.00000	`XP_057788944.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72841851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:72841873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B16,C38
`Chr1:72841887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:72842828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B124,B140,B81,C82
`Chr1:72842979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr1:72843096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:72843136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr1:72843276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B114,B121,B19
`Chr1:72843294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B53,C18,C50,C6
`Chr1:72843414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:72843429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:72843678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788944.1

1412 aa

706

1412

FGAR-AT_N

FGAR-AT_linker

AIRS_C

FGAR-AT_PurM_N-like

AIRS_C

GATase_5

PF18076 FGAR-AT_N 124-244 aa PF18072 FGAR-AT_linker 271-320 aa PF02769 AIRS_C 533-688 aa PF22689 FGAR-AT_PurM_N-like 759-912 aa PF02769 AIRS_C 943-1073 aa PF13507 GATase_5 1142-1411 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788944.1`	Pfam	`PF18076`	FGAR-AT_N	Domain	124	244	1.2e-19	71.1	Formylglycinamide ribonucleotide amidotransferase N-terminal
`XP_057788944.1`	Pfam	`PF18072`	FGAR-AT_linker	Domain	271	320	4.1e-11	43.9	Formylglycinamide ribonucleotide amidotransferase linker domain
`XP_057788944.1`	Pfam	`PF02769`	AIRS_C	Domain	533	688	5.9e-49	166.9	AIR synthase related protein, C-terminal domain
`XP_057788944.1`	Pfam	`PF22689`	FGAR-AT_PurM_N-like	Domain	759	912	7.9e-53	179.2	FGAR-AT PurM_N-like domain
`XP_057788944.1`	Pfam	`PF02769`	AIRS_C	Domain	943	1073	5.9e-49	166.9	AIR synthase related protein, C-terminal domain
`XP_057788944.1`	Pfam	`PF13507`	GATase_5	Domain	1142	1411	7.9e-107	356.9	CobB/CobQ-like glutamine amidotransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009095362.1
CTTTTTTCTCTCTCTCAAAGCAAAAAACCTCAAGTCTTTTTTCCGTCTGTTTTGTTCAGCGCCGCACTTTTGTCTTCCTTTAGCTGCTGCCCCTGTTTGCTCCCACCGCCGCCGCCGCCGCCTCCCTTTTATCGGCAGCCCGTCGCCGCCGTAGACGCTTCCACCGGTCGCTCACATCTCCGTCGCCGCTGTCGACTCGCTGATATTTCCGTCGCTGCACCGCCGCAAAACCGTGAAAAAAGCGCTGCCAACAGAGAGAA...

XR_009095363.1
AAATAATTAAATAAAATCTCAGCCTTTTTTCTCTCTCTCAAAGCAAAAAACCTCAAGTCTTTTTTCCGTCTGTTTTGTTCAGCGCCGCACTTTTGTCTTCCTTTAGCTGCTGCCCCTGTTTGCTCCCACCGCCGCCGCCGCCGCCTCCCTTTTATCGGCAGCCCGTCGCCGCCGTAGACGCTTCCACCGGTCGCTCACATCTCCGTCGCCGCTGTCGACTCGCTGATATTTCCGTCGCTGCACCGCCGCAAAACCGTGAA...

CDS

1 records

下载 CDS FASTA

LOC131005860
ATGGCTGCAGCTTTTGAACTCACAGCTGCAGATTTTTTACAAGGTGCTTATAGGCAAAAACTAGCTTTGCCTAAACATTCCTATAGACAGACAGATTGCCTACTTTGGGGAAGAAGGCTACCAAGAAAACAGCCTTCTGTAAGAATTTCTCGTCGAGAAATTGCGTCGAGGCAATTGAAGGTGAAAGCGGTGGTCTCAAGAGATGTATGCAGTTCAGTAAGCACGGAGTCAGATCGGCTTCAGAGGGCTTCTCAAGAGGT...

Protein

1 records

下载 Protein FASTA

XP_057788944.1
MAAAFELTAADFLQGAYRQKLALPKHSYRQTDCLLWGRRLPRKQPSVRISRREIASRQLKVKAVVSRDVCSSVSTESDRLQRASQEVVHFYRIPLLQDNETAELLKLVQTKVSSQIVGLKTEQCFNIGVDGNLSEDKVSALRWLLGETYEPDNLGAESFLDEEMKSSSNAVVVEVGPRLSFTTAWSSNAVSICRACNLTEISRLERSRRYLLCLAPGSASLVESQISEFAALVHDRMTECVYNQKLTSFERAVVPEEVRY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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