Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005653`

染色体: Chr01 坐标: 72893237-72895904 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005653`
名称	SmilChr01G005653
描述	glycerol-3-phosphate acyltransferase 5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72893237 - 72895904 / `-`

ID 对照

NCBI Gene ID	`LOC131005900`
GeneID	`131005900`
locus_tag	`-`
NCBI Name	`LOC131005900`
原始查询	`SmilChr01G005653`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycerol-3-phosphate acyltransferase 5-like
产物	glycerol-3-phosphate acyltransferase 5-like
Arabidopsis	`AT3G11430` (GPAT5) glycerol-3-phosphate acyltransferase 5 [Source:NCBI gene (formerly Entrezgene);Acc:820316] identity=69.3; qcov=0.99; evalue=0; confidence=high
Rice	`Os05g0457800` (GPAT) - identity=66.5; qcov=0.966; evalue=0; confidence=high
GO	GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01553 (Acyltransferase); PF12710 (HAD); PF23270 (HAD_RAM2_N)
InterPro	-
eggNOG	-
NR	GeneID:131005900

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057789003.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057789003.1`
3	Nucleus	细胞核	0.00000	`XP_057789003.1`
4	Chromosome	染色体	0.00000	`XP_057789003.1`
5	Centromere	着丝粒	0.00000	`XP_057789003.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72893666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:72893699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:72893777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C28
`Chr1:72893810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B13,B130,C4
`Chr1:72894037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:72894099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:72894210`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A6
`Chr1:72894210`	`AC`	`A`	1bp_deletion	CDS_variant	1	A6
`Chr1:72894217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr1:72894350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:72894392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B124
`Chr1:72895174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B52,C20,C30,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789003.1

497 aa

248

497

HAD_RAM2_N

HAD

Acyltransferase

PF23270 HAD_RAM2_N 3-189 aa PF12710 HAD 19-159 aa PF01553 Acyltransferase 279-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789003.1`	Pfam	`PF23270`	HAD_RAM2_N	Domain	3	189	2.6e-59	200.8	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
`XP_057789003.1`	Pfam	`PF12710`	HAD	Family	19	159	1.9e-07	32.4	haloacid dehalogenase-like hydrolase
`XP_057789003.1`	Pfam	`PF01553`	Acyltransferase	Family	279	380	8.4e-06	26.3	Acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933020.1
TGTTGCAAACTGATAAACAGCCTTCTCTTTCTATTACACCATAGTCGTATCAACCTTCATCTAATTTTCCCTTCAACATTTTCAATTCACTTCTTCATCGTTATAATCAAAATCCCAATTTGTTGCATATAATTTCTCGAAAGATATTTTGCAAAAAAACTAAACGAAATTTATTTTAGCTTAGGGTTATGGAGTCCGTCGTTGCGGAGTTTGAAGGGGGGATTTTGAGGGAGCAAGATGTGTTTTCCTACTTCATGTTG...

CDS

1 records

下载 CDS FASTA

LOC131005900
ATGGAGTCCGTCGTTGCGGAGTTTGAAGGGGGGATTTTGAGGGAGCAAGATGTGTTTTCCTACTTCATGTTGATAGCTTTCGAGGCGTCCGGGCTGATCCGGTTCGCCTCGTTGCTGGCCCTGTGGCCCGTGGTTCGCCTCCTTGAGGCGGCCGGGAGAGGGGACCGCGGCCTGAAGCTCACTATCTTCGTGGCCACGGCCGGGGTCCCCCTGCAAGAGATTGAGGCCGTGGCGAGGGCCGTGTTGCCGAAGTTCTACTT...

Protein

1 records

下载 Protein FASTA

XP_057789003.1
MESVVAEFEGGILREQDVFSYFMLIAFEASGLIRFASLLALWPVVRLLEAAGRGDRGLKLTIFVATAGVPLQEIEAVARAVLPKFYLDDVDMEAWRVFSSCERRVVVTKMPRVMVERFVKEHLRGDEVVGVELCSNRFGYATGFVEGDVGSIVAKRVASLFGDQEPSLGLGRPSSTCGSLFLPLCKEQCHPLLTTTKKHEHHVVRPLPVIFHDGRLAKRPTPATALLILLWIPIGILLAAIRIAIGVLLPMSVATRIAPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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