Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005660`

染色体: Chr01 坐标: 72941431-72945167 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005660`
名称	SmilChr01G005660
描述	E3 ubiquitin-protein ligase SDIR1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	72941431 - 72945167 / `+`

ID 对照

NCBI Gene ID	`LOC131005971`
GeneID	`131005971`
locus_tag	`-`
NCBI Name	`LOC131005971`
原始查询	`SmilChr01G005660`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase SDIR1
产物	E3 ubiquitin-protein ligase SDIR1
Arabidopsis	`AT3G55530` (SDIR1) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824718] identity=76; qcov=1; evalue=6.07e-145; confidence=high
Rice	`Os03g0272300` (OsSDIR1) - identity=72.3; qcov=1.04; evalue=1.67e-131; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131005971

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057789089.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057789089.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057789089.1`
4	Endosome	内体	0.40000	`XP_057789089.1`
5	Endosome membrane	内体膜	0.40000	`XP_057789089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:72943053`	`G`	`GT`	1bp_insertion	frameshift_variant	64	A16,A6,A9,B10,B108,B11,B112,B114,B118,B119,B122,B132,B133,B17,B19,B28,B29,B30,B31,B45,B5,B50,B6,B60,B63,B66,B67,B68,B71,B72,B73,B77,B8,B82,B87,B88,B97,B99,C11,C12,C19,C2,C21,C23,C25,C29,C36,C39,C43,C48,C56,C63,C67,C69,C72,C74,C77,C80,C84,C85,C9,D3,D7,D9
`Chr1:72943558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B118,C25,C31,C72
`Chr1:72943730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:72944689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,A7
`Chr1:72944723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr1:72944736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,B51
`Chr1:72944904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,C53
`Chr1:72944946`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:72944968`	`GCT`	`G`	2bp_deletion	frameshift_variant	3	A15,B58,C70
`Chr1:72944968`	`GCT`	`G`	2bp_deletion	CDS_variant	3	A15,B58,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789089.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

XP_057789090.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

XP_057789091.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

XP_057789092.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

XP_057789093.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

XP_057789094.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

XP_057789095.1

274 aa

137

274

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

zf-rbx1

PF13639 zf-RING_2 211-253 aa PF17123 zf-RING_11 212-239 aa PF00097 zf-C3HC4 212-252 aa PF13923 zf-C3HC4_2 212-252 aa PF12678 zf-rbx1 229-253 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789089.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789089.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789089.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789089.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789089.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain
`XP_057789090.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789090.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789090.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789090.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789090.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain
`XP_057789091.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789091.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789091.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789091.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789091.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain
`XP_057789092.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789092.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789092.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789092.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789092.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain
`XP_057789093.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789093.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789093.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789093.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789093.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain
`XP_057789094.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789094.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789094.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789094.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789094.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain
`XP_057789095.1`	Pfam	`PF13639`	zf-RING_2	Domain	211	253	2.4e-13	50.8	Ring finger domain
`XP_057789095.1`	Pfam	`PF17123`	zf-RING_11	Domain	212	239	4.8e-09	36.5	RING-like zinc finger
`XP_057789095.1`	Pfam	`PF00097`	zf-C3HC4	Domain	212	252	3.6e-08	33.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789095.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	212	252	1.6e-08	34.9	Zinc finger, C3HC4 type (RING finger)
`XP_057789095.1`	Pfam	`PF12678`	zf-rbx1	Domain	229	253	2.2e-07	31.7	RING-H2 zinc finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057933106.1
CGTCAGAGCATGCTGCTGTCTGTGTTACACAGGAAGCAGTAATTGGGAAAAGTAATCTCATTTTAGTTTCATCGTTGGGCTTTTTTTTTCTTTATTTATTTTTTTGGTAATTTATGCGTCGATATTCAAAAAGCTCTAACGCAGAAATCAACCAATTTTTTCTTCAACCAAATCACTTTGTTTGATCGACTATTTGCATTCGGATCCATACTACAGAACAATCACTGATTGGTTCTCACTGTGTATAAAATCTTTTGGCA...

XM_057933111.1
AGCAGTAATTGGGAAAAGTAATCTCATTTTAGTTTCATCGTTGGGCTTTTTTTTTCTTTATTTATTTTTTTGGTAATTTATGCGTCGATATTCAAAAAGCTCTAACGCAGAAATCAACCAATTTTTTCTTCAACCAAATCACTTTGTTTGATCGACTATTTGCATTCGGATCCATACTACAGAACAATCACTTTGTTGGAAATCATGAGTTTTGTTTTCAGAGGTACTAGAGGAGATATAGAAACTGGGTTTCCAGGACT...

CDS

7 records

下载 CDS FASTA

LOC131005971
ATGAGTTTTGTTTTCAGAGGTACTAGAGGAGATATAGAAACTGGGTTTCCAGGACTTATTCCTGAACGGCGTGCAGTGCGAGTTCATGCTGCTCGACCAGTCAATACCAACTCCTTAGCTTTTCTTGTCACAGTGCTTTTGCTGTTTATGATTCTGAACTCGCACCAAATGTCCCCCAATTTTCTGCTCTGGCTGGTGCTTGGGGTCTTTCTGATGGCAACTACGTTAAGGATGTATGCAACATGTCAGCAACTTCAAGC...

Protein

7 records

下载 Protein FASTA

XP_057789089.1
MSFVFRGTRGDIETGFPGLIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAVAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDADNVPTASMTDEEINALPVHKYKVSGPQGVGTSVQQGSSSASVEKKQDLPNPQVGLKTSDDDLTCSVCLEQVNAGELIRSLPCLHQFHVNCIDPWLRQQGTCPVCKYRAGSQW...

XP_057789090.1
MSFVFRGTRGDIETGFPGLIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAVAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDADNVPTASMTDEEINALPVHKYKVSGPQGVGTSVQQGSSSASVEKKQDLPNPQVGLKTSDDDLTCSVCLEQVNAGELIRSLPCLHQFHVNCIDPWLRQQGTCPVCKYRAGSQW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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