当前解析结果
SmilChr01G005668| 统一新 Gene ID | SmilChr01G005668 |
|---|---|
| 名称 | SmilChr01G005668 |
| 描述 | uncharacterized SmilChr01G005668 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72973582 - 72977871 / - |
| NCBI Gene ID | LOC131012797 |
|---|---|
| GeneID | 131012797 |
| locus_tag | - |
| NCBI Name | LOC131012797 |
| 原始查询 | SmilChr01G005668 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=26.6; qcov=0.431; evalue=1.53e-62; confidence=low |
| Rice | Os06g0484800- identity=30.7; qcov=0.617; evalue=2.07e-113; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796787.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057796787.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057796787.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796787.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796787.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72973595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B55,B76,C23 |
Chr1:72973620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B28,B90 |
Chr1:72973639 |
C |
T |
EMS_canonical_SNV | stop_gained | 53 | A18,A2,A20,A4,A6,A8,A9,B100,B101,B108,B109,B11,B117,B127,B129,B13,B131,B132,B136,B137,B139,B14,B2,B25,B34,B41,B42,B43,B54,B60,B67,B68,B72,B85,B89,B9,B91,C1,C11,C13,C14,C2,C26,C33,C39,C43,C59,C60,C70,C75,C8,D4,D8 |
Chr1:72973656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B27,B62,D3 |
Chr1:72973668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C23,C79 |
Chr1:72973669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,C37 |
Chr1:72973694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,A20,C33 |
Chr1:72973743 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B73,C23,C79 |
Chr1:72973743 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B73,C23,C79 |
Chr1:72973759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:72973797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr1:72973853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B115,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796787.1PF03372
Exo_endo_phos 45-207 aa
PF00078
RVT_1 442-702 aa
PF13966
zf-RVT 964-1053 aa
PF13456
RVT_3 1162-1284 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796787.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 45 | 207 | 1e-09 | 39.2 | Endonuclease/Exonuclease/phosphatase family |
XP_057796787.1 |
Pfam | PF00078 |
RVT_1 | Domain | 442 | 702 | 4.7e-27 | 95.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057796787.1 |
Pfam | PF13966 |
zf-RVT | Domain | 964 | 1053 | 1.1e-16 | 61.9 | zinc-binding in reverse transcriptase |
XP_057796787.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1162 | 1284 | 9.9e-19 | 68.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。