Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005679`

染色体: Chr01 坐标: 73060461-73061805 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005679`
名称	SmilChr01G005679
描述	uncharacterized SmilChr01G005679
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73060461 - 73061805 / `+`

ID 对照

NCBI Gene ID	`LOC131005965`
GeneID	`131005965`
locus_tag	`-`
NCBI Name	`LOC131005965`
原始查询	`SmilChr01G005679`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OJ1439_F07.19-1; symbol=OJ1439_F07.19-1; hit=Os09g0526800; species=rice; confidence=low
产物	OJ1439_F07.19-1; symbol=OJ1439_F07.19-1; hit=Os09g0526800; species=rice; confidence=low
Arabidopsis	`AT5G06370` (AT5G06370) NC domain-containing protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830525] identity=35.8; qcov=0.575; evalue=2.5e-19; confidence=low
Rice	`Os09g0526800` (OJ1439_F07.19-1) - identity=37.3; qcov=0.561; evalue=6.36e-20; confidence=low
GO	-
KEGG	-
Pfam	PF04970 (LRAT)
InterPro	-
eggNOG	-
NR	GeneID:131005965

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789080.1`
2	Cytosol	细胞质基质	1.00000	`XP_057789080.1`
3	Nucleus	细胞核	0.60000	`XP_057789080.1`
4	Secreted	分泌到胞外	0.20000	`XP_057789079.1`
5	Chromosome	染色体	0.00000	`XP_057789080.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73060530`	`GAC`	`G`	2bp_deletion	frameshift_variant	4	B108,C2,C23,C65
`Chr1:73060530`	`GAC`	`G`	2bp_deletion	CDS_variant	4	B108,C2,C23,C65
`Chr1:73060545`	`ATT`	`A`	2bp_deletion	frameshift_variant	51	A15,A19,A20,A22,A23,A8,B100,B103,B104,B105,B110,B123,B138,B18,B24,B31,B33,B34,B42,B6,B63,B65,B78,B79,B85,B89,B9,B94,B96,B97,C11,C13,C15,C32,C37,C38,C45,C46,C5,C51,C52,C53,C6,C61,C63,C64,C66,C67,C68,C69,D8
`Chr1:73060548`	`G`	`GAA`	2bp_insertion	frameshift_variant	4	A15,B63,C11,C69
`Chr1:73060548`	`G`	`GAA`	2bp_insertion	CDS_variant	4	A15,B63,C11,C69
`Chr1:73060554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,C2,C23,C65
`Chr1:73060559`	`AT`	`A`	1bp_deletion	frameshift_variant	4	B108,C2,C23,C65
`Chr1:73060559`	`AT`	`A`	1bp_deletion	CDS_variant	4	B108,C2,C23,C65
`Chr1:73060565`	`T`	`TAA`	2bp_insertion	frameshift_variant	1	B94
`Chr1:73060565`	`T`	`TAA`	2bp_insertion	CDS_variant	1	B94
`Chr1:73060570`	`A`	`AC`	1bp_insertion	frameshift_variant	42	A20,A22,A23,A8,B100,B103,B104,B105,B110,B123,B18,B24,B31,B33,B34,B42,B6,B78,B79,B85,B89,B9,B96,B97,C13,C15,C37,C38,C45,C46,C5,C51,C52,C53,C6,C61,C63,C64,C66,C67,D10,D8
`Chr1:73060658`	`C`	`CAG`	2bp_insertion	frameshift_variant	5	A15,B107,C11,C69,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789079.1

290 aa

145

290

LRAT

PF04970 LRAT 14-142 aa PF04970 LRAT 158-285 aa

XP_057789080.1

287 aa

144

287

LRAT

PF04970 LRAT 30-139 aa PF04970 LRAT 155-282 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789079.1`	Pfam	`PF04970`	LRAT	Domain	14	142	1.7e-28	100.1	Lecithin retinol acyltransferase
`XP_057789079.1`	Pfam	`PF04970`	LRAT	Domain	158	285	1.7e-28	100.1	Lecithin retinol acyltransferase
`XP_057789080.1`	Pfam	`PF04970`	LRAT	Domain	30	139	3.2e-26	92.7	Lecithin retinol acyltransferase
`XP_057789080.1`	Pfam	`PF04970`	LRAT	Domain	155	282	3.2e-26	92.7	Lecithin retinol acyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933096.1
AAAAGAGTGCGTAAGAGAGAGATGGAGAGACCTGAAGAGAGAGAGATAGAGAGACACCAATGGCGACCAGACGTATACAGCTGGATTGCAGAAGGATTATTTCATGAGAATCATCATGGTACAATTCTGCTAATCCTTTTTATCGACATTTATATTTCATCTTAATCGTCTGTTAATGTTGTGGAGGGATCTGAAGACAGAGATAGAGAGACACCAATTGCGACCAGGCGATCATATAAACAGGTGGAGAGCAGGAGGAA...

XM_057933097.1
GAGAGATGGAGAGACCTGAAGAGAGAGAGATAGAGAGACACCAATGGCGACCAGACGTATACAGCTGGATTGCAGAAGGATTATTTCATGAGAATCATCATGGTATCTACATGGGTGATGACCGAGTGGTGCACTTCACTAGAAGAAAGGAACGTTCCTGCCCAGCTTGTGAGATGCTAGAGCATGGTGATCGTGACAGGGGAGTCATCGTATCTTGTCTCGATTGTTTCATAGACTCGGGATTGCTGGGCCGTCGTGAA...

CDS

2 records

下载 CDS FASTA

LOC131005965
ATGGAGAGACCTGAAGAGAGAGAGATAGAGAGACACCAATGGCGACCAGACGTATACAGCTGGATTGCAGAAGGATTATTTCATGAGAATCATCATGGTATCTACATGGGTGATGACCGAGTGGTGCACTTCACTAGAAGAAAGGAACGTTCCTGCCCAGCTTGTGAGATGCTAGAGCATGGTGATCGTGACAGGGGAGTCATCGTATCTTGTCTCGATTGTTTCATAGACTCGGGATTGCTGGGCCGTCGTGAATACGG...

LOC131005965
ATGTTGTGGAGGGATCTGAAGACAGAGATAGAGAGACACCAATTGCGACCAGGCGATCATATAAACAGGTGGAGAGCAGGAGGAATATTTCCTAAGAAACATCATGGTATCTACATGGGTGATGACCGAGTGGTGCACTTCACTAGAAGAAAGGAACGTTCCTGCCCAGCTTGTGAGATGCTAGAGCATGGTGATCGTGACAGGGGAGTCATCGTATCTTGTCTCGATTGTTTCATAGACTCGGGATTGCTGGGCCGTCG...

Protein

2 records

下载 Protein FASTA

XP_057789079.1
MLWRDLKTEIERHQLRPGDHINRWRAGGIFPKKHHGIYMGDDRVVHFTRRKERSCPACEMLEHGDRDRGVIVSCLDCFIDSGLLGRREYGVSTEGIAESDPVELVLERADQSLLANYNNEFGEYDALIRNSSEKFAFFCKTEGYSGPWYDYLRQRGELQPGDHIRSWRNRHGIYTGKHLGVHRVVYFTGAREREACSSCRSSTAYSIRNSGVIVSCLKCFLHSGPGTYFYNSLQFYRRHVNNAAHESSPAVVERAFSKLF...

XP_057789080.1
MERPEEREIERHQWRPDVYSWIAEGLFHENHHGIYMGDDRVVHFTRRKERSCPACEMLEHGDRDRGVIVSCLDCFIDSGLLGRREYGVSTEGIAESDPVELVLERADQSLLANYNNEFGEYDALIRNSSEKFAFFCKTEGYSGPWYDYLRQRGELQPGDHIRSWRNRHGIYTGKHLGVHRVVYFTGAREREACSSCRSSTAYSIRNSGVIVSCLKCFLHSGPGTYFYNSLQFYRRHVNNAAHESSPAVVERAFSKLFENG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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