Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005680`

染色体: Chr01 坐标: 73072286-73073726 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005680`
名称	SmilChr01G005680
描述	uncharacterized SmilChr01G005680
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	73072286 - 73073726 / `-`

ID 对照

NCBI Gene ID	`LOC131005970`
GeneID	`131005970`
locus_tag	`-`
NCBI Name	`LOC131005970`
原始查询	`SmilChr01G005680`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]; symbol=AT3G24530; hit=AT3G24530; species=arabidopsis; confidence=high
产物	AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]; symbol=AT3G24530; hit=AT3G24530; species=arabidopsis; confidence=high
Arabidopsis	`AT3G24530` (AT3G24530) AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048] identity=61.4; qcov=1.02; evalue=2.31e-115; confidence=high
Rice	`Os02g0266300` - identity=59.5; qcov=1.03; evalue=2.89e-111; confidence=high
GO	GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF29043 (DUF8495)
InterPro	-
eggNOG	-
NR	GeneID:131005970

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057789088.1`
2	Cytoplasm	细胞质	0.80000	`XP_057789088.1`
3	Nucleus	细胞核	0.40000	`XP_057789088.1`
4	Chromosome	染色体	0.00000	`XP_057789088.1`
5	Centromere	着丝粒	0.00000	`XP_057789088.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:73072324`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:73072333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr1:73072334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B64,B83,C52,C71
`Chr1:73072335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr1:73072336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B130,B63,C14
`Chr1:73072337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr1:73072344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr1:73072355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,C3
`Chr1:73072369`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr1:73072374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,C3
`Chr1:73072375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr1:73072386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B70,B95,C51,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789088.1

275 aa

138

275

AAA

DUF8495

PF00004 AAA 53-162 aa PF29043 DUF8495 183-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789088.1`	Pfam	`PF00004`	AAA	Domain	53	162	2.9e-13	51.1	ATPase family associated with various cellular activities (AAA)
`XP_057789088.1`	Pfam	`PF29043`	DUF8495	Domain	183	270	1.1e-27	96.9	Domain of unknown function (DUF8495)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933105.1
TTATTTTTACAGATTTCGTTAATGACATGGCATGGCAGCCAGATTGAAAGGGAAGTTAGGAGTTCATAATGAAGCAGATAAGTTTGTTGTCAATTTGAGATATAGAACATGTAATTGTAGATTTGGGATGTTAATCCGGCTGCCTTGTCAGTAACGATTTGGGGTGCAAAACCAGAAAATGAGAATTGTACTACATTTTTTAAACTTTAAAGTGCAATTTGATATTTCATTTTCATGTATTCTATTTTTATGAAAAAGAC...

CDS

1 records

下载 CDS FASTA

LOC131005970
ATGAAGGGGAAGATGGATGAATTAGAGTTGGAGCTATCGAAGATAGTAGGACTACACGAGCTGAAGCTGCAGCTTCGAAAATGGGCCAAGGGCATGCTCTTGGACGAGAAGCGCCGTGCCACGGGCGTAGACCTCGGCCCCAGGAAACCGCCTCACATGGCCTTCCTTGGAAACCCCGGGACAGGCAAGACTACAGTTGCAAGAATCCTAGGAAAGCTACTCTGTTGTGTTGGTGTTCTGTCTTCTGATAAGGTAACGGA...

Protein

1 records

下载 Protein FASTA

XP_057789088.1
MKGKMDELELELSKIVGLHELKLQLRKWAKGMLLDEKRRATGVDLGPRKPPHMAFLGNPGTGKTTVARILGKLLCCVGVLSSDKVTEVQRTDLVGEYIGETGPKTREKIEEAMGGILFVDEAYRLASDINYDFGKEALEEIMSMLEDGHLLVIFAGYTNPMKGVFSCNEGFCRRVTHFFQFDDFSCRELAEMLLLKMSKQDKKSRLCGFKLDSCCSLDAVESVIERKSSEVDHMLNNARENLNSRVSFEAEGDELLTITL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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