Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005681

染色体: Chr01 坐标: 73074860-73078591 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005681
名称SmilChr01G005681
描述uncharacterized SmilChr01G005681
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向73074860 - 73078591 / -

ID 对照

NCBI Gene IDLOC131005882
GeneID131005882
locus_tag-
NCBI NameLOC131005882
原始查询SmilChr01G005681

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]; symbol=AT3G24530; hit=AT3G24530; species=arabidopsis; confidence=high
产物AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]; symbol=AT3G24530; hit=AT3G24530; species=arabidopsis; confidence=high
ArabidopsisAT3G24530 (AT3G24530)
AAA-type ATPase family protein / ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:822048]
identity=59.4; qcov=0.69; evalue=2.82e-148; confidence=high
RiceOs02g0266300
-
identity=58.2; qcov=0.697; evalue=5.56e-140; confidence=high
GOGO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity)
KEGG-
PfamPF00004 (AAA); PF00023 (Ank); PF04970 (LRAT); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF29043 (DUF8495)
InterPro-
eggNOG-
NRGeneID:131005882

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057788975.1
2 Cytoplasm 细胞质 0.40000 XP_057788975.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057788976.1
4 Nucleus 细胞核 0.00000 XP_057788975.1
5 Chromosome 染色体 0.00000 XP_057788975.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:73075220 C T EMS_canonical_SNV CDS_variant 2 B11,C19
Chr1:73075223 G A EMS_canonical_SNV CDS_variant 2 B55,B71
Chr1:73075233 G A EMS_canonical_SNV CDS_variant 3 B107,B88,C21
Chr1:73075254 C T EMS_canonical_SNV CDS_variant 2 B126,C58
Chr1:73075283 C T EMS_canonical_SNV CDS_variant 1 B104
Chr1:73075318 G A EMS_canonical_SNV CDS_variant 4 A10,B124,B48,B64
Chr1:73075326 G A EMS_canonical_SNV CDS_variant 4 A11,B129,B16,B7
Chr1:73075458 CTT C 2bp_deletion frameshift_variant 3 B112,B29,B77
Chr1:73075458 CTT C 2bp_deletion CDS_variant 3 B112,B29,B77
Chr1:73075504 C T EMS_canonical_SNV CDS_variant 1 C11
Chr1:73075510 C T EMS_canonical_SNV CDS_variant 1 C33
Chr1:73075512 G A EMS_canonical_SNV CDS_variant 1 B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788975.1
637 aa
N
1
318
637
LRAT
Ank_4
Ank_2
Ank_3
Ank
Ank_5
Ank_3
Ank
Ank_4
Ank
AAA
DUF8495
C
PF04970 LRAT 20-149 aa PF13637 Ank_4 178-229 aa PF12796 Ank_2 178-275 aa PF13606 Ank_3 210-230 aa PF00023 Ank 210-234 aa PF13857 Ank_5 241-286 aa PF13606 Ank_3 245-273 aa PF00023 Ank 245-277 aa PF13637 Ank_4 250-287 aa PF00023 Ank 281-313 aa PF00004 AAA 403-506 aa PF29043 DUF8495 533-631 aa
XP_057788976.1
525 aa
N
1
262
525
LRAT
Ank_4
Ank_2
Ank_3
Ank
Ank_5
Ank_3
Ank
Ank_2
Ank_4
Ank
AAA
C
PF04970 LRAT 20-149 aa PF13637 Ank_4 178-229 aa PF12796 Ank_2 178-275 aa PF13606 Ank_3 210-230 aa PF00023 Ank 210-234 aa PF13857 Ank_5 241-286 aa PF13606 Ank_3 245-273 aa PF00023 Ank 245-277 aa PF12796 Ank_2 245-313 aa PF13637 Ank_4 250-287 aa PF00023 Ank 281-313 aa PF00004 AAA 403-506 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057788975.1 Pfam PF04970 LRAT Domain 20 149 7.3e-16 59.3 Lecithin retinol acyltransferase
XP_057788975.1 Pfam PF13637 Ank_4 Repeat 178 229 1.6e-17 63.9 Ankyrin repeats (many copies)
XP_057788975.1 Pfam PF12796 Ank_2 Repeat 178 275 4.2e-21 76.0 Ankyrin repeats (3 copies)
XP_057788975.1 Pfam PF13606 Ank_3 Repeat 210 230 2e-17 62.0 Ankyrin repeat
XP_057788975.1 Pfam PF00023 Ank Repeat 210 234 8.3e-22 76.8 Ankyrin repeat
XP_057788975.1 Pfam PF13857 Ank_5 Repeat 241 286 3e-16 60.1 Ankyrin repeats (many copies)
XP_057788975.1 Pfam PF13606 Ank_3 Repeat 245 273 2e-17 62.0 Ankyrin repeat
XP_057788975.1 Pfam PF00023 Ank Repeat 245 277 8.3e-22 76.8 Ankyrin repeat
XP_057788975.1 Pfam PF13637 Ank_4 Repeat 250 287 1.6e-17 63.9 Ankyrin repeats (many copies)
XP_057788975.1 Pfam PF00023 Ank Repeat 281 313 8.3e-22 76.8 Ankyrin repeat
XP_057788975.1 Pfam PF00004 AAA Domain 403 506 4e-11 44.2 ATPase family associated with various cellular activities (AAA)
XP_057788975.1 Pfam PF29043 DUF8495 Domain 533 631 1.8e-38 131.5 Domain of unknown function (DUF8495)
XP_057788976.1 Pfam PF04970 LRAT Domain 20 149 4.9e-16 59.8 Lecithin retinol acyltransferase
XP_057788976.1 Pfam PF13637 Ank_4 Repeat 178 229 7.1e-18 65.0 Ankyrin repeats (many copies)
XP_057788976.1 Pfam PF12796 Ank_2 Repeat 178 275 1.3e-27 96.9 Ankyrin repeats (3 copies)
XP_057788976.1 Pfam PF13606 Ank_3 Repeat 210 230 1e-17 62.9 Ankyrin repeat
XP_057788976.1 Pfam PF00023 Ank Repeat 210 234 5.1e-22 77.4 Ankyrin repeat
XP_057788976.1 Pfam PF13857 Ank_5 Repeat 241 286 1.4e-16 61.1 Ankyrin repeats (many copies)
XP_057788976.1 Pfam PF13606 Ank_3 Repeat 245 273 1e-17 62.9 Ankyrin repeat
XP_057788976.1 Pfam PF00023 Ank Repeat 245 277 5.1e-22 77.4 Ankyrin repeat
XP_057788976.1 Pfam PF12796 Ank_2 Repeat 245 313 1.3e-27 96.9 Ankyrin repeats (3 copies)
XP_057788976.1 Pfam PF13637 Ank_4 Repeat 250 287 7.1e-18 65.0 Ankyrin repeats (many copies)
XP_057788976.1 Pfam PF00023 Ank Repeat 281 313 5.1e-22 77.4 Ankyrin repeat
XP_057788976.1 Pfam PF00004 AAA Domain 403 506 4.1e-11 44.1 ATPase family associated with various cellular activities (AAA)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057932992.1
GAGAGAGATGGATATGGGATTGGGATTTCTTCTCTCAAATCTAGTGCTAGTGGAGAGACGCCACTTGTATCGAGGCGATCATATATACACCCGCGCAGGTTTTTGTGCGTACCATGGTATATACAAGGGTGAAGACCAAGTGGTGCACTTCATCAGTGCTCCACAAAGAAGAAGGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATATTGATCGTAACAGTGGAGTCGTCGTATCGTGTCTCGATTGCTTCCTTAACT...
XM_057932993.1
GAGAGATGGATATGGGATTGGGATTTCTTCTCTCAAATCTAGTGCTAGTGGAGAGACGCCACTTGTATCGAGGCGATCATATATACACCCGCGCAGGTTTTTGTGCGTACCATGGTATATACAAGGGTGAAGACCAAGTGGTGCACTTCATCAGTGCTCCACAAAGAAGAAGGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATATTGATCGTAACAGTGGAGTCGTCGTATCGTGTCTCGATTGCTTCCTTAACTCG...

CDS

2 records

下载 CDS FASTA
LOC131005882
ATGGATATGGGATTGGGATTTCTTCTCTCAAATCTAGTGCTAGTGGAGAGACGCCACTTGTATCGAGGCGATCATATATACACCCGCGCAGGTTTTTGTGCGTACCATGGTATATACAAGGGTGAAGACCAAGTGGTGCACTTCATCAGTGCTCCACAAAGAAGAAGGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATATTGATCGTAACAGTGGAGTCGTCGTATCGTGTCTCGATTGCTTCCTTAACTCGGGAGA...
LOC131005882
ATGGATATGGGATTGGGATTTCTTCTCTCAAATCTAGTGCTAGTGGAGAGACGCCACTTGTATCGAGGCGATCATATATACACCCGCGCAGGTTTTTGTGCGTACCATGGTATATACAAGGGTGAAGACCAAGTGGTGCACTTCATCAGTGCTCCACAAAGAAGAAGGGGACGCTGCTCAGCTTGTGACTTGTTAGATTATATTGATCGTAACAGTGGAGTCGTCGTATCGTGTCTCGATTGCTTCCTTAACTCGGGAGA...

Protein

2 records

下载 Protein FASTA
XP_057788975.1
MDMGLGFLLSNLVLVERRHLYRGDHIYTRAGFCAYHGIYKGEDQVVHFISAPQRRRGRCSACDLLDYIDRNSGVVVSCLDCFLNSGELYRYEYGVSPIALFLYGPIFNTIAESGPVEVVMERAEKLLRDNDFFTNNCENFAIYCKTGRSWNRAQVFVGRVGNTNFPTPAITSKSPTNIHACVESGSLTGLKKLLAQNPSSLNERSNVLRQTPLHIAASQNKVDVMKYLLEWSGAVKVELEANNVYGETPLHEAIKNGCNG...
XP_057788976.1
MDMGLGFLLSNLVLVERRHLYRGDHIYTRAGFCAYHGIYKGEDQVVHFISAPQRRRGRCSACDLLDYIDRNSGVVVSCLDCFLNSGELYRYEYGVSPIALFLYGPIFNTIAESGPVEVVMERAEKLLRDNDFFTNNCENFAIYCKTGRSWNRAQVFVGRVGNTNFPTPAITSKSPTNIHACVESGSLTGLKKLLAQNPSSLNERSNVLRQTPLHIAASQNKVDVMKYLLEWSGAVKVELEANNVYGETPLHEAIKNGCNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器