当前解析结果
SmilChr01G005684| 统一新 Gene ID | SmilChr01G005684 |
|---|---|
| 名称 | SmilChr01G005684 |
| 描述 | plant UBX domain-containing protein 10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73105131 - 73109166 / - |
| NCBI Gene ID | LOC131005918 |
|---|---|
| GeneID | 131005918 |
| locus_tag | - |
| NCBI Name | LOC131005918 |
| 原始查询 | SmilChr01G005684 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plant UBX domain-containing protein 10 |
| 产物 | plant UBX domain-containing protein 10 |
| Arabidopsis | AT4G10790 (AT4G10790)UBX domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826675] identity=69; qcov=1.04; evalue=0; confidence=high |
| Rice | Os10g0520600- identity=64.5; qcov=1.01; evalue=1.15e-177; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum); GO:0030433 (GO:0030433); GO:0043130 (ubiquitin binding) |
| KEGG | - |
| Pfam | PF00789 (UBX); PF14555 (UBA_4); PF21021 (FAF1); PF22566 (UBA_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005918 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057789022.1 |
| 2 | Vesicle | 囊泡 | 0.60000 | XP_057789022.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057789022.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057789022.1 |
| 5 | Cytoplasm | 细胞质 | 0.20000 | XP_057789022.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73105557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr1:73105640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:73106153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C38 |
Chr1:73106217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B75,C17,C83 |
Chr1:73106235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B22,C37 |
Chr1:73106240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr1:73106253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:73106442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,C71 |
Chr1:73108353 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B113 |
Chr1:73108353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr1:73108481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr1:73108633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789022.1PF14555
UBA_4 6-40 aa
PF22566
UBA_8 6-42 aa
PF21021
FAF1 153-225 aa
PF00789
UBX 382-461 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789022.1 |
Pfam | PF14555 |
UBA_4 | Domain | 6 | 40 | 9.7e-11 | 42.0 | UBA-like domain |
XP_057789022.1 |
Pfam | PF22566 |
UBA_8 | Domain | 6 | 42 | 2.4e-07 | 31.2 | UBA-like domain |
XP_057789022.1 |
Pfam | PF21021 |
FAF1 | Domain | 153 | 225 | 1.6e-11 | 44.9 | Fas-associated factor 1 |
XP_057789022.1 |
Pfam | PF00789 |
UBX | Domain | 382 | 461 | 1.6e-20 | 73.8 | UBX domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。