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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005686

染色体: Chr01 坐标: 73113003-73117631 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005686
名称SmilChr01G005686
描述pentatricopeptide repeat-containing protein At2g16880
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向73113003 - 73117631 / +

ID 对照

NCBI Gene IDLOC131012870
GeneID131012870
locus_tag-
NCBI NameLOC131012870
原始查询SmilChr01G005686

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g16880
产物pentatricopeptide repeat-containing protein At2g16880
ArabidopsisAT2G16880 (AT2G16880)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816189]
identity=51.9; qcov=0.87; evalue=0; confidence=high
RiceOs03g0201400
-
identity=41.8; qcov=0.949; evalue=0; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012870

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057796845.1
2 Nucleus 细胞核 0.00000 XP_057796845.1
3 Chromosome 染色体 0.00000 XP_057796845.1
4 Centromere 着丝粒 0.00000 XP_057796845.1
5 Chromatin 染色质 0.00000 XP_057796845.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:73113012 AT A 1bp_deletion frameshift_variant 37 A2,A6,B104,B105,B12,B13,B140,B24,B28,B36,B38,B39,B46,B65,B66,B98,C12,C16,C17,C2,C27,C37,C39,C4,C43,C46,C48,C54,C64,C66,C70,C75,C80,C82,C85,D2,D7
Chr1:73113013 T TA 1bp_insertion frameshift_variant 5 B98,C27,C64,C66,C85
Chr1:73113013 T TA 1bp_insertion CDS_variant 5 B98,C27,C64,C66,C85
Chr1:73114220 CT C 1bp_deletion frameshift_variant 3 B36,B38,B65
Chr1:73114220 CT C 1bp_deletion CDS_variant 3 B36,B38,B65
Chr1:73114302 C T EMS_canonical_SNV CDS_variant 1 B105
Chr1:73114347 C T EMS_canonical_SNV CDS_variant 1 B74
Chr1:73114355 G A EMS_canonical_SNV CDS_variant 1 B1
Chr1:73114374 C T EMS_canonical_SNV CDS_variant 2 B39,C54
Chr1:73114507 C T EMS_canonical_SNV CDS_variant 1 C72
Chr1:73114528 C T EMS_canonical_SNV CDS_variant 3 C36,C72,C80
Chr1:73114567 C T EMS_canonical_SNV CDS_variant 2 C59,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796845.1
817 aa
N
1
408
817
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 171-218 aa PF01535 PPR 175-201 aa PF13812 PPR_3 176-218 aa PF13812 PPR_3 232-291 aa PF12854 PPR_1 240-272 aa PF13041 PPR_2 243-284 aa PF01535 PPR 246-272 aa PF13812 PPR_3 267-323 aa PF13041 PPR_2 279-328 aa PF01535 PPR 283-312 aa PF13812 PPR_3 303-359 aa PF12854 PPR_1 310-342 aa PF01535 PPR 318-346 aa PF13041 PPR_2 318-362 aa PF23276 TPR_24 318-408 aa PF13812 PPR_3 338-396 aa PF12854 PPR_1 346-378 aa PF13041 PPR_2 349-396 aa PF01535 PPR 353-379 aa PF13812 PPR_3 373-433 aa PF12854 PPR_1 382-413 aa PF13041 PPR_2 384-431 aa PF01535 PPR 387-417 aa PF17177 PPR_long 388-520 aa PF23276 TPR_24 403-515 aa PF13812 PPR_3 408-466 aa PF12854 PPR_1 415-448 aa PF01535 PPR 422-452 aa PF13041 PPR_2 422-468 aa PF23276 TPR_24 440-551 aa PF13812 PPR_3 444-495 aa PF12854 PPR_1 451-482 aa PF13041 PPR_2 454-503 aa PF01535 PPR 457-487 aa PF13812 PPR_3 513-569 aa PF12854 PPR_1 521-553 aa PF13041 PPR_2 525-573 aa PF01535 PPR 527-557 aa PF13041 PPR_2 559-605 aa PF01535 PPR 562-592 aa PF12854 PPR_1 590-623 aa PF13041 PPR_2 594-644 aa PF01535 PPR 598-625 aa PF12854 PPR_1 628-656 aa PF13041 PPR_2 630-666 aa PF01535 PPR 633-662 aa PF13812 PPR_3 655-712 aa PF12854 PPR_1 662-694 aa PF13041 PPR_2 666-712 aa PF01535 PPR 668-697 aa PF01535 PPR 704-731 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 171 218 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 175 201 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 176 218 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 232 291 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 240 272 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 243 284 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 246 272 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 267 323 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 279 328 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 283 312 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 303 359 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 310 342 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF01535 PPR Repeat 318 346 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 318 362 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF23276 TPR_24 Repeat 318 408 9.4e-37 126.6 Pentatricopeptide repeat-containing protein
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 338 396 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 346 378 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 349 396 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 353 379 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 373 433 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 382 413 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 384 431 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 387 417 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF17177 PPR_long Repeat 388 520 1.9e-33 116.4 Pentacotripeptide-repeat region of PRORP
XP_057796845.1 Pfam PF23276 TPR_24 Repeat 403 515 9.4e-37 126.6 Pentatricopeptide repeat-containing protein
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 408 466 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 415 448 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF01535 PPR Repeat 422 452 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 422 468 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF23276 TPR_24 Repeat 440 551 9.4e-37 126.6 Pentatricopeptide repeat-containing protein
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 444 495 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 451 482 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 454 503 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 457 487 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 513 569 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 521 553 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 525 573 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 527 557 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 559 605 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 562 592 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 590 623 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 594 644 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 598 625 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 628 656 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 630 666 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 633 662 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF13812 PPR_3 Repeat 655 712 2.8e-76 252.3 Pentatricopeptide repeat domain
XP_057796845.1 Pfam PF12854 PPR_1 Repeat 662 694 3.3e-149 484.9 PPR repeat
XP_057796845.1 Pfam PF13041 PPR_2 Repeat 666 712 6.6e-174 564.7 PPR repeat family
XP_057796845.1 Pfam PF01535 PPR Repeat 668 697 9.3e-110 352.2 PPR repeat
XP_057796845.1 Pfam PF01535 PPR Repeat 704 731 9.3e-110 352.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940862.1
ATGATGCGAATTCTCCTTTTTTTTTTTTTTTTCAATAAGTGCCTATGTAAAACCCCTCTCCCCCTCCGCCTTCAAAAATCTAAACCCAACCAAGCAATGTCCACCACCGCCGAATCGCCGCCGCCGCCGCCGCTACTAACCCACACAGAATTAATCTCCACCATCATCACCTTCCTGAAGAATTCCAACCCCGCCACAGCCACCCTCAACGCCGCCCTATCTCCCTACCTCCCCCAACTAACTCCCGACGTCTTGCACTC...

CDS

1 records

下载 CDS FASTA
LOC131012870
ATGATGCGAATTCTCCTTTTTTTTTTTTTTTTCAATAAGTGCCTATGTAAAACCCCTCTCCCCCTCCGCCTTCAAAAATCTAAACCCAACCAAGCAATGTCCACCACCGCCGAATCGCCGCCGCCGCCGCCGCTACTAACCCACACAGAATTAATCTCCACCATCATCACCTTCCTGAAGAATTCCAACCCCGCCACAGCCACCCTCAACGCCGCCCTATCTCCCTACCTCCCCCAACTAACTCCCGACGTCTTGCACTC...

Protein

1 records

下载 Protein FASTA
XP_057796845.1
MMRILLFFFFFNKCLCKTPLPLRLQKSKPNQAMSTTAESPPPPPLLTHTELISTIITFLKNSNPATATLNAALSPYLPQLTPDVLHSILSSSALHRHPSALLSFFNWAQSAAPLTPLPLPPLLSLLSSLISHNKFDDAKALLQSQIVSEHPHHHLHRHLLHPARPLPPPSATLLNTCIFAYCRSGWPHLAAQLFKKMKRLKIRPNLLTLNTLLNSLVKKDLSSRSTHFCKELFDDAVKLGVSPSVVTFNILINGYCLEYK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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