当前解析结果
SmilChr01G005695| 统一新 Gene ID | SmilChr01G005695 |
|---|---|
| 名称 | SmilChr01G005695 |
| 描述 | protein INVOLVED IN DE NOVO 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73223758 - 73230586 / - |
| NCBI Gene ID | LOC131005866 |
|---|---|
| GeneID | 131005866 |
| locus_tag | - |
| NCBI Name | LOC131005866 |
| 原始查询 | SmilChr01G005695 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein INVOLVED IN DE NOVO 2-like |
| 产物 | protein INVOLVED IN DE NOVO 2-like |
| Arabidopsis | AT3G48670 (IDN2)XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824027] identity=48.8; qcov=0.549; evalue=0; confidence=medium |
| Rice | Os01g0633200 (X1)- identity=41.3; qcov=0.543; evalue=1.87e-161; confidence=medium |
| GO | GO:0080188 (gene silencing by siRNA-directed DNA methylation) |
| KEGG | - |
| Pfam | PF03468 (XS); PF03469 (XH); PF03470 (zf-XS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005866 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788951.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057788951.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057788951.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788951.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788951.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73224046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B103,B109,B36 |
Chr1:73224048 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B94,C1 |
Chr1:73224048 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B94,C1 |
Chr1:73224060 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B81 |
Chr1:73224060 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B81 |
Chr1:73227104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:73227525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B114,B140,B57,C86 |
Chr1:73227605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:73227687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C75 |
Chr1:73227747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B41,B65,C20,C72 |
Chr1:73227755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:73227787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788951.1PF03470
zf-XS 57-100 aa
PF03468
XS 136-246 aa
PF03470
zf-XS 278-321 aa
PF03468
XS 377-487 aa
PF03470
zf-XS 518-561 aa
PF03468
XS 605-713 aa
PF03469
XH 994-1124 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788951.1 |
Pfam | PF03470 |
zf-XS | Domain | 57 | 100 | 1.4e-41 | 141.2 | XS zinc finger domain |
XP_057788951.1 |
Pfam | PF03468 |
XS | Domain | 136 | 246 | 1.2e-108 | 358.1 | XS domain |
XP_057788951.1 |
Pfam | PF03470 |
zf-XS | Domain | 278 | 321 | 1.4e-41 | 141.2 | XS zinc finger domain |
XP_057788951.1 |
Pfam | PF03468 |
XS | Domain | 377 | 487 | 1.2e-108 | 358.1 | XS domain |
XP_057788951.1 |
Pfam | PF03470 |
zf-XS | Domain | 518 | 561 | 1.4e-41 | 141.2 | XS zinc finger domain |
XP_057788951.1 |
Pfam | PF03468 |
XS | Domain | 605 | 713 | 1.2e-108 | 358.1 | XS domain |
XP_057788951.1 |
Pfam | PF03469 |
XH | Domain | 994 | 1124 | 1.5e-54 | 184.1 | XH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。