当前解析结果
SmilChr01G005696| 统一新 Gene ID | SmilChr01G005696 |
|---|---|
| 名称 | SmilChr01G005696 |
| 描述 | AP3-complex subunit beta-A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73233188 - 73241369 / + |
| NCBI Gene ID | LOC131005865 |
|---|---|
| GeneID | 131005865 |
| locus_tag | - |
| NCBI Name | LOC131005865 |
| 原始查询 | SmilChr01G005696 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AP3-complex subunit beta-A |
| 产物 | AP3-complex subunit beta-A |
| Arabidopsis | AT3G55480 (PAT2)protein affected trafficking 2 [Source:NCBI gene (formerly Entrezgene);Acc:824714] identity=57.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0973300- identity=46.7; qcov=0.855; evalue=0; confidence=high |
| GO | GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport); GO:0030117 (membrane coat); GO:0030123 (AP-3 adaptor complex) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01602 (Adaptin_N); PF12717 (Cnd1); PF14796 (AP3B1_C); PF24080 (AP3B1_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005865 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057788950.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057788950.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057788950.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057788950.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057788950.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73233345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:73233465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr1:73233961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr1:73234012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B41,B65,C20,C72 |
Chr1:73234036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B41,B65,C20,C72 |
Chr1:73234171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B61,B85,B95,D5 |
Chr1:73234173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr1:73235204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr1:73235485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:73235636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr1:73235681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:73236471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788950.1PF01602
Adaptin_N 42-639 aa
PF12717
Cnd1 120-244 aa
PF14796
AP3B1_C 846-906 aa
PF24080
AP3B1_C_2 985-1123 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788950.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 42 | 639 | 4.7e-100 | 336.3 | Adaptin N terminal region |
XP_057788950.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 120 | 244 | 1.4e-17 | 65.0 | non-SMC mitotic condensation complex subunit 1 |
XP_057788950.1 |
Pfam | PF14796 |
AP3B1_C | Family | 846 | 906 | 1.7e-07 | 32.0 | Clathrin-adaptor complex-3 beta-1 subunit C-terminal |
XP_057788950.1 |
Pfam | PF24080 |
AP3B1_C_2 | Domain | 985 | 1123 | 1.8e-07 | 32.2 | AP-3 complex subunit beta-1, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。