当前解析结果
SmilChr01G005699| 统一新 Gene ID | SmilChr01G005699 |
|---|---|
| 名称 | SmilChr01G005699 |
| 描述 | uncharacterized SmilChr01G005699 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73247640 - 73252887 / - |
| NCBI Gene ID | LOC131005891 |
|---|---|
| GeneID | 131005891 |
| locus_tag | - |
| NCBI Name | LOC131005891 |
| 原始查询 | SmilChr01G005699 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Source:NCBI gene (formerly Entrezgene);Acc:818552]; symbol=AT2G39690; hit=AT2G39690; species=arabidopsis; confidence=medium |
| 产物 | ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Source:NCBI gene (formerly Entrezgene);Acc:818552]; symbol=AT2G39690; hit=AT2G39690; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G39690 (AT2G39690)ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Source:NCBI gene (formerly Entrezgene);Acc:818552] identity=42.9; qcov=1.04; evalue=7.04e-135; confidence=medium |
| Rice | Os01g0147800- identity=40.5; qcov=0.906; evalue=1.25e-99; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF04784 (DUF547); PF14389 (Lzipper-MIP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005891 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057788991.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057788991.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057788991.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057788991.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057788991.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73247877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:73248682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B51 |
Chr1:73249045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B131 |
Chr1:73249958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,B59,C53 |
Chr1:73249964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B59,C19,C53,C59 |
Chr1:73250182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:73250189 |
CAG |
C |
2bp_deletion | frameshift_variant | 9 | A14,B137,B36,B6,C13,C14,C36,C4,C49 |
Chr1:73250258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B35,B42,B43 |
Chr1:73250281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr1:73250349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C25,D10 |
Chr1:73250414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C85 |
Chr1:73250432 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B38,B39,C54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788991.1PF14389
Lzipper-MIP1 15-98 aa
PF04784
DUF547 323-449 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788991.1 |
Pfam | PF14389 |
Lzipper-MIP1 | Family | 15 | 98 | 2.5e-13 | 50.9 | Leucine-zipper of ternary complex factor MIP1 |
XP_057788991.1 |
Pfam | PF04784 |
DUF547 | Family | 323 | 449 | 9.5e-35 | 120.0 | Protein of unknown function, DUF547 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。