当前解析结果
SmilChr01G005710| 统一新 Gene ID | SmilChr01G005710 |
|---|---|
| 名称 | SmilChr01G005710 |
| 描述 | succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73325379 - 73329438 / + |
| NCBI Gene ID | LOC131005953 |
|---|---|
| GeneID | 131005953 |
| locus_tag | - |
| NCBI Name | LOC131005953 |
| 原始查询 | SmilChr01G005710 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial |
| 产物 | succinate--CoA ligase [ADP-forming] subunit alpha-2%2C mitochondrial |
| Arabidopsis | AT5G23250 (AT5G23250)Succinyl-CoA ligase, alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:832389] identity=84.1; qcov=1.03; evalue=0; confidence=high |
| Rice | Os07g0577700- identity=86; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0004775 (succinate-CoA ligase (ADP-forming) activity); GO:0004776 (succinate-CoA ligase (GDP-forming) activity); GO:0005739 (mitochondrion); GO:0006099 (tricarboxylic acid cycle); GO:0009361 (succinate-CoA ligase complex (ADP-forming)) |
| KEGG | smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00549 (Ligase_CoA); PF02629 (CoA_binding); PF13607 (Succ_CoA_lig) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005953 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057789061.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057789061.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789061.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789061.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789061.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73325619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B62,C48 |
Chr1:73326741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr1:73326980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C17 |
Chr1:73327057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,D11 |
Chr1:73327493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,C54 |
Chr1:73328541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B62,C48,C86 |
Chr1:73329099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C35 |
Chr1:73329140 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr1:73329145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C80,D2 |
Chr1:73329163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C4,C72 |
Chr1:73329166 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789061.1PF02629
CoA_binding 40-133 aa
PF13607
Succ_CoA_lig 180-314 aa
PF00549
Ligase_CoA 186-307 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789061.1 |
Pfam | PF02629 |
CoA_binding | Domain | 40 | 133 | 5.4e-34 | 117.5 | CoA binding domain |
XP_057789061.1 |
Pfam | PF13607 |
Succ_CoA_lig | Domain | 180 | 314 | 4.1e-11 | 43.5 | Succinyl-CoA ligase like flavodoxin domain |
XP_057789061.1 |
Pfam | PF00549 |
Ligase_CoA | Domain | 186 | 307 | 6.9e-30 | 104.6 | CoA-ligase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。