Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G005712

染色体: Chr01 坐标: 73337500-73338856 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G005712
名称SmilChr01G005712
描述uncharacterized SmilChr01G005712
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向73337500 - 73338856 / +

ID 对照

NCBI Gene IDLOC131005981
GeneID131005981
locus_tag-
NCBI NameLOC131005981
原始查询SmilChr01G005712

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836054]; symbol=AT5G59350; hit=AT5G59350; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836054]; symbol=AT5G59350; hit=AT5G59350; species=arabidopsis; confidence=medium
ArabidopsisAT5G59350 (AT5G59350)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:836054]
identity=37.6; qcov=0.89; evalue=1.88e-25; confidence=medium
RiceOs11g0703600
-
identity=39.9; qcov=0.506; evalue=2.23e-16; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131005981

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.60000 XP_057789105.1
2 Cell membrane 细胞膜 0.60000 XP_057789105.1
3 Cytoplasm 细胞质 0.20000 XP_057789105.1
4 Chromosome 染色体 0.00000 XP_057789105.1
5 Centromere 着丝粒 0.00000 XP_057789105.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:73337908 AT A 1bp_deletion frameshift_variant 62 A15,A5,A8,B1,B100,B103,B117,B132,B21,B23,B26,B40,B41,B43,B5,B54,B55,B56,B65,B71,B76,B78,B8,B83,B90,B99,C15,C17,C18,C2,C20,C21,C24,C29,C34,C35,C4,C40,C42,C43,C45,C46,C48,C53,C56,C58,C59,C60,C64,C65,C67,C69,C71,C72,C76,C82,C87,D10,D2,D4,D7,D8
Chr1:73337955 C T EMS_canonical_SNV CDS_variant 5 B62,C38,C46,C69,D7
Chr1:73338003 C T EMS_canonical_SNV CDS_variant 1 C59
Chr1:73338115 C T EMS_canonical_SNV CDS_variant 1 A10
Chr1:73338211 G A EMS_canonical_SNV CDS_variant 3 A2,B2,B23
Chr1:73338261 G A EMS_canonical_SNV CDS_variant 2 B51,C39
Chr1:73338297 G A EMS_canonical_SNV CDS_variant 1 A6
Chr1:73338339 G A EMS_canonical_SNV CDS_variant 2 A22,C25
Chr1:73338365 TCC T 2bp_deletion frameshift_variant 4 B139,B98,C18,C22
Chr1:73338365 TCC T 2bp_deletion CDS_variant 4 B139,B98,C18,C22
Chr1:73338389 C T EMS_canonical_SNV CDS_variant 2 B117,B20
Chr1:73338426 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057933122.1
ATTTATAATCGAACACTTATTTGAAAACAAAGGAAATCTCATGCATGAGATAATCCGCATTTCACATACATCATCAATGAATCTCGACTTCCTTTTCCCATCATTTTACAGGCTATCATAATCTCCAAAACACAAAAACAAACTTTTCTTCTTCCCATTTTGCCCCTCAAAACTTCACTCTAAAAAAAAACAACAAAAAAAACCATTTCCTTCCCTAGTAAACAACAAATGAAAGCATTCAATCCCACATGACATAGCCA...

CDS

1 records

下载 CDS FASTA
LOC131005981
ATGAAATCCATAAGCGGATTAGGCCTTGGATTATGCGTCGTCTTCGGCAGCCTCCTCCTAGCCCTAATTGCAGAGCTCTACTACCTCCTATGGTGGAAGAAGAAGAAGATCATCACCACCACCGCCGCCGCCACCACCATCAACGAAGCTCAAATCCAAATCCCACGAAAAAGATCGAATTTTTCATACATTCTCCACTTCTGCCAAAGACCCTCTTCCTCCTCGCTGAGATCCGCCGCTCACGAGCTCTGCAACTCCCC...

Protein

1 records

下载 Protein FASTA
XP_057789105.1
MKSISGLGLGLCVVFGSLLLALIAELYYLLWWKKKKIITTTAAATTINEAQIQIPRKRSNFSYILHFCQRPSSSSLRSAAHELCNSPTLVHEPQSSNSSSKDLWLRKPFAEENMGNFPRFLFTITEETREDLESEDGVFKKASRSNLSDLLQILETPFLTPMASPPYFTPPLTPSFCEGESPFWECAEFRRRASPPPAFKFLRDAEEKMAMRERGDERESEGNGQFITLVIDEKDEGRDGIGIKNCSLEEDECFSSSRFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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