当前解析结果
SmilChr01G005735| 统一新 Gene ID | SmilChr01G005735 |
|---|---|
| 名称 | SmilChr01G005735 |
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73479335 - 73480341 / - |
| NCBI Gene ID | LOC131012922 |
|---|---|
| GeneID | 131012922 |
| locus_tag | - |
| NCBI Name | LOC131012922 |
| 原始查询 | SmilChr01G005735 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen-specific leucine-rich repeat extensin-like protein 3 |
| 产物 | pollen-specific leucine-rich repeat extensin-like protein 3 |
| Arabidopsis | -- |
| Rice | -- |
| GO | GO:0003779 (actin binding); GO:0005737 (cytoplasm); GO:0005884 (actin filament); GO:0008017 (microtubule binding); GO:0030041 (actin filament polymerization) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012922 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796877.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057796877.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796877.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796877.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796877.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73479512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,C79 |
Chr1:73479566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B72,B73,C72 |
Chr1:73479567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B20 |
Chr1:73479572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B126,B133,B33,B94 |
Chr1:73479576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B126,B133,B33,B94 |
Chr1:73479589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B1,B19,C15 |
Chr1:73479615 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | A1,A6,C21,C47,C83 |
Chr1:73479615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A6,C21,C47,C83 |
Chr1:73479644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B69 |
Chr1:73479651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B37,B70,C77,C9 |
Chr1:73479667 |
C |
CA |
1bp_insertion | frameshift_variant | 10 | A1,A3,B118,B50,B53,C16,C68,C74,C83,C84 |
Chr1:73479669 |
G |
GA |
1bp_insertion | frameshift_variant | 14 | A6,B11,B12,B126,B35,B68,B71,C30,C47,C52,C58,C75,D2,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。