当前解析结果
SmilChr01G005739| 统一新 Gene ID | SmilChr01G005739 |
|---|---|
| 名称 | SmilChr01G005739 |
| 描述 | receptor-like protein 9DC3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73510849 - 73513232 / + |
| NCBI Gene ID | LOC131005980 |
|---|---|
| GeneID | 131005980 |
| locus_tag | - |
| NCBI Name | LOC131005980 |
| 原始查询 | SmilChr01G005739 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein 9DC3 |
| 产物 | receptor-like protein 9DC3 |
| Arabidopsis | AT2G32660 (RLP22)receptor like protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:817826] identity=40.5; qcov=0.958; evalue=6.24e-47; confidence=medium |
| Rice | Os12g0221700- identity=42.4; qcov=0.905; evalue=3.12e-47; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005980 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789104.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789104.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789104.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789104.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789104.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73512308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr1:73512313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B14,B26 |
Chr1:73512335 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B107,C12,C29 |
Chr1:73512335 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B107,C12,C29 |
Chr1:73512347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B53,B64,C24,C47 |
Chr1:73512406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B90,C16,C29,C64 |
Chr1:73512430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,C29 |
Chr1:73512444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:73512492 |
A |
AAG |
2bp_insertion | frameshift_variant | 10 | A24,B109,B118,B123,B13,B73,C35,C63,C69,C7 |
Chr1:73512569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr1:73512616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr1:73512624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789104.1PF00560
LRR_1 13-30 aa
PF00560
LRR_1 70-92 aa
PF13855
LRR_8 70-129 aa
PF13516
LRR_6 93-105 aa
PF00560
LRR_1 94-115 aa
PF00560
LRR_1 119-138 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789104.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 13 | 30 | 4.8e-19 | 65.1 | Leucine Rich Repeat |
XP_057789104.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 70 | 92 | 4.8e-19 | 65.1 | Leucine Rich Repeat |
XP_057789104.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 70 | 129 | 4.4e-11 | 43.1 | Leucine rich repeat |
XP_057789104.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 93 | 105 | 3.7e-07 | 30.4 | Leucine Rich repeat |
XP_057789104.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 94 | 115 | 4.8e-19 | 65.1 | Leucine Rich Repeat |
XP_057789104.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 119 | 138 | 4.8e-19 | 65.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。