当前解析结果
SmilChr01G005745| 统一新 Gene ID | SmilChr01G005745 |
|---|---|
| 名称 | SmilChr01G005745 |
| 描述 | LRR receptor-like serine/threonine-protein kinase GSO1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 73545181 - 73546698 / + |
| NCBI Gene ID | LOC131006007 |
|---|---|
| GeneID | 131006007 |
| locus_tag | - |
| NCBI Name | LOC131006007 |
| 原始查询 | SmilChr01G005745 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase GSO1 |
| 产物 | LRR receptor-like serine/threonine-protein kinase GSO1 |
| Arabidopsis | AT1G34110 (AT1G34110)Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840310] identity=44.8; qcov=0.951; evalue=3.75e-27; confidence=medium |
| Rice | Os06g0587200- identity=42.2; qcov=0.951; evalue=1.06e-28; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006007 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057789142.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057789142.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057789142.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057789142.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057789142.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:73545588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr1:73545605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:73545654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B129,B35,C52,C7 |
Chr1:73545732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B55,C68 |
Chr1:73545735 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C62,D3 |
Chr1:73545790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,B84,C52 |
Chr1:73546389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,A2,B119,B46 |
Chr1:73546403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B98,C69,D6 |
Chr1:73546405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C54 |
Chr1:73546412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C47 |
Chr1:73546416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr1:73546436 |
T |
TG |
1bp_insertion | frameshift_variant | 5 | B39,B69,B79,C55,C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789142.1PF13855
LRR_8 17-54 aa
PF00560
LRR_1 21-42 aa
PF00560
LRR_1 44-65 aa
PF13516
LRR_6 67-79 aa
PF00560
LRR_1 69-89 aa
PF00560
LRR_1 96-117 aa
PF00560
LRR_1 119-140 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789142.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 17 | 54 | 2.3e-14 | 53.6 | Leucine rich repeat |
XP_057789142.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 21 | 42 | 8.8e-19 | 64.3 | Leucine Rich Repeat |
XP_057789142.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 44 | 65 | 8.8e-19 | 64.3 | Leucine Rich Repeat |
XP_057789142.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 67 | 79 | 4.2e-06 | 27.1 | Leucine Rich repeat |
XP_057789142.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 69 | 89 | 8.8e-19 | 64.3 | Leucine Rich Repeat |
XP_057789142.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 96 | 117 | 8.8e-19 | 64.3 | Leucine Rich Repeat |
XP_057789142.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 119 | 140 | 8.8e-19 | 64.3 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。